SCOPe 2.06: Domain d1pb9a_: 1pb9 A:

Lineage for d1pb9a_ (1pb9 A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)

6. Protein N-methyl-D-aspartate receptor subunit 1 [89787] (3 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [89788] (27 PDB entries)

8. Domain d1pb9a_: 1pb9 A: [88027]
   complexed with 4ax

Details for d1pb9a_

PDB Entry: 1pb9, 1.6 Å

PDB Description: crystal structure of the nr1 ligand binding core in complex with d- cycloserine at 1.60 angstroms resolution

PDB Compounds: (A:) N-methyl-D-aspartate Receptor Subunit 1

SCOPe Domain Sequences for d1pb9a_:

Sequence, based on SEQRES records:

>d1pb9a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}
trlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndtspgsprhtvpqcc
ygfcidlliklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadmiva
pltinteraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdi
yfrrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttge
lffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvryqecds

Sequence, based on observed residues (ATOM records):

>d1pb9a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}
trlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpnhtvpqccygfcidll
iklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadmivapltinter
aqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdiyfrrqvel
stmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttgelffrsgfg
igmrkdspwkqnvslsilkshengfmedldktwvryqecds

Timeline for d1pb9a_:

• d1pb9a_ first appeared in SCOP 1.65
  
• d1pb9a_ appears in SCOPe 2.05
  
• d1pb9a_ appears in SCOPe 2.07
  
• d1pb9a_ appears in the current release, SCOPe 2.08