SCOP 1.67: Domain d1omib2: 1omi B:2138-2237

Lineage for d1omib2 (1omi B:2138-2237)

1. Root: SCOP 1.67

2. Class a: All alpha proteins [46456] (202 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (12 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (45 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.4: CAP C-terminal domain-like [46796] (3 proteins)

6. Protein Listeriolysin regulatory protein PrfA, C-terminal domain [88975] (1 species)

7. Species Bacteria (Listeria monocytogenes) [TaxId:1639] [88976] (1 PDB entry)

8. Domain d1omib2: 1omi B:2138-2237 [87082]
   Other proteins in same PDB: d1omia1, d1omib1
   complexed with gol

Details for d1omib2

PDB Entry: 1omi, 2.8 Å

PDB Description: crystal structure of prfa,the transcriptional regulator in listeria monocytogenes

SCOP Domain Sequences for d1omib2:

Sequence, based on SEQRES records:

>d1omib2 a.4.5.4 (B:2138-2237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes)}
gklgsicgqlliltyvygketpdgikitldnltmqelgyssgiahssavsriisklkqek
vivyknscfyvqnldylkryapkldewfylacpatwgkln

Sequence, based on observed residues (ATOM records):

>d1omib2 a.4.5.4 (B:2138-2237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes)}
gklgsicgqlliltyvygketpdgikitldnltmqelgyssavsriisklkqekvivykn
scfyvqnldylkryapkldewfylacpatwgkln

Timeline for d1omib2:

• d1omib2 first appeared in SCOP 1.65
  
• d1omib2 appears in SCOP 1.69
  
• d1omib2 appears in the current release, SCOPe 2.08