Lineage for d1obya1 (1oby A:197-270)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2379659Fold b.36: PDZ domain-like [50155] (1 superfamily)
    contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
  4. 2379660Superfamily b.36.1: PDZ domain-like [50156] (7 families) (S)
    peptide-binding domain
  5. 2379661Family b.36.1.1: PDZ domain [50157] (47 protein domains)
    Pfam PF00595
  6. 2379917Protein Syntenin 1 [89311] (1 species)
  7. 2379918Species Human (Homo sapiens) [TaxId:9606] [89312] (11 PDB entries)
  8. 2379934Domain d1obya1: 1oby A:197-270 [86784]
    Other proteins in same PDB: d1obya2
    second PDZ domain; complexed with an interleukin 5 receptor alpha peptide, chains P and Q
    complexed with so4

Details for d1obya1

PDB Entry: 1oby (more details), 1.85 Å

PDB Description: crystal structure of the complex of pdz2 of syntenin with a syndecan-4 peptide.
PDB Compounds: (A:) Syntenin 1

SCOPe Domain Sequences for d1obya1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1obya1 b.36.1.1 (A:197-270) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d1obya1:

Click to download the PDB-style file with coordinates for d1obya1.
(The format of our PDB-style files is described here.)

Timeline for d1obya1:

View in 3D
Domains from same chain:
(mouse over for more information)
View in 3D
Domains from other chains:
(mouse over for more information)