SCOP 1.65: Domain d1ny1b_: 1ny1 B:

Lineage for d1ny1b_ (1ny1 B:)

1. Root: SCOP 1.65

2. Class c: Alpha and beta proteins (a/b) [51349] (121 folds)

3. Fold c.6: 7-stranded beta/alpha barrel [51988] (3 superfamilies)
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands

4. Superfamily c.6.2: Glycoside hydrolase/deacetylase [88713] (3 families)
   in the different families beta-barrels are similarly distorted but may vary in the number of strands

5. Family c.6.2.3: NodB-like polysaccharide deacetylase [89559] (1 protein)
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456

6. Protein Probable polysaccharide deacetylase PdaA [89560] (1 species)

7. Species Bacillus subtilis [TaxId:1423] [89561] (1 PDB entry)

8. Domain d1ny1b_: 1ny1 B: [86396]
   structural genomics; target SR127
   complexed with mse

Details for d1ny1b_

PDB Entry: 1ny1, 1.8 Å

PDB Description: crystal structure of b. subtilis polysaccharide deacetylase northeast structural genomics consortium target sr127.

SCOP Domain Sequences for d1ny1b_:

Sequence; same for both SEQRES and ATOM records:

>d1ny1b_ c.6.2.3 (B:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis}
vpnepinwgfkrsvnhqppdagkqlnsliekydafylgntkektiyltfdngyengytpk
vldvlkkhrvtgtffvtghfvkdqpqlikrmsdeghiignhsfhhpdlttktadqiqdel
dsvneevykitgkqdnlylrpprgvfseyvlketkrlgyqtvfwsvafvdwkinnqkgkk
yaydhmikqahpgaiyllhtvsrdnaealddaitdlkkqgytfksiddlmfekem

Timeline for d1ny1b_:

• d1ny1b_ is new in SCOP 1.65
  
• d1ny1b_ appears in SCOP 1.67
  
• d1ny1b_ appears in the current release, SCOPe 2.08