Lineage for d1ndgb1 (1ndg B:301-413)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287195Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287702Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] [88558] (17 PDB entries)
  8. 287709Domain d1ndgb1: 1ndg B:301-413 [85578]
    Other proteins in same PDB: d1ndga1, d1ndga2, d1ndgb2, d1ndgc_
    a part of Fab HYHEL-8
    complexed with acy; mutant

Details for d1ndgb1

PDB Entry: 1ndg (more details), 1.9 Å

PDB Description: Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme

SCOP Domain Sequences for d1ndgb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ndgb1 b.1.1.1 (B:301-413) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.2}
evqlqesgpslvkpsqtlsltcsvtgdsiirdywswirkfpgnkleymgyisfsgntfyh
pslksrisitrdtsknqhylqlssvttedtatyycanwdgtywgegtlvtvsa

SCOP Domain Coordinates for d1ndgb1:

Click to download the PDB-style file with coordinates for d1ndgb1.
(The format of our PDB-style files is described here.)

Timeline for d1ndgb1: