Lineage for d1nd0a2 (1nd0 A:108-214)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2020524Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 protein domains)
  6. 2023413Protein Immunoglobulin light chain kappa constant domain, CL-kappa [88566] (4 species)
  7. 2023645Species Mouse (Mus musculus) [TaxId:10090] [88567] (355 PDB entries)
    Uniprot P01837# KAC_MOUSE Ig kappa chain C region; 99% sequence identity ! SQ NA # natural chimera; best hits are: Uniprot P01637 (Ig kappa chain V-V region T1) and Uniprot P01837 (Ig kappa chain C region) ! Uniprot P01837 # KAC_MOUSE Ig kappa chain C region ! Uniprot P01837 # KAC_MOUSE (P01837) Ig kappa chain C region ! SQ NA # part of Fab 28 against HIV-1 RT ! Uniprot P01837 # ! KAC_MOUSE Ig kappa chain C region
  8. 2023885Domain d1nd0a2: 1nd0 A:108-214 [85560]
    Other proteins in same PDB: d1nd0a1, d1nd0b1, d1nd0b2, d1nd0c1, d1nd0d1, d1nd0d2, d1nd0e1, d1nd0f1, d1nd0f2, d1nd0g1, d1nd0h1, d1nd0h2
    part of cationic cyclization catalytic Fab 4C6
    complexed with dp4, so4

Details for d1nd0a2

PDB Entry: 1nd0 (more details), 2.45 Å

PDB Description: cationic cyclization antibody 4c6 complex with transition state analog
PDB Compounds: (A:) immunoglobulin igg2a

SCOPe Domain Sequences for d1nd0a2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1nd0a2 b.1.1.2 (A:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}
radaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqd
skdstysmsstltltkdeyerhnsytceathktstspivksfnrnec

SCOPe Domain Coordinates for d1nd0a2:

Click to download the PDB-style file with coordinates for d1nd0a2.
(The format of our PDB-style files is described here.)

Timeline for d1nd0a2: