Lineage for d1m7da1 (1m7d A:1-108)

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 451612Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 451743Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (126 PDB entries)
  8. 451823Domain d1m7da1: 1m7d A:1-108 [84861]
    Other proteins in same PDB: d1m7da2, d1m7db1, d1m7db2
    part of Fab specific for Y lipopolysaccharide

Details for d1m7da1

PDB Entry: 1m7d (more details), 2.3 Å

PDB Description: crystal structure of a monoclonal fab specific for shigella flexneri y lipopolysaccharide complexed with a trisaccharide

SCOP Domain Sequences for d1m7da1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1m7da1 b.1.1.1 (A:1-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1}
dvvltqtplslpvrlgdqasiscrssqsllhsdgntylhwylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyfcsqtthvptfgggtkleikr

SCOP Domain Coordinates for d1m7da1:

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(The format of our PDB-style files is described here.)

Timeline for d1m7da1:

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Domains from same chain:
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d1m7da2