SCOPe 2.03: Domain d1lv5b2: 1lv5 B:469-876

Lineage for d1lv5b2 (1lv5 B:469-876)

1. Root: SCOPe 2.03

2. Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

7. Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (44 PDB entries)
   Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
   Uniprot Q45458 298-876 # 88% sequence identity

8. Domain d1lv5b2: 1lv5 B:469-876 [84722]
   Other proteins in same PDB: d1lv5a1, d1lv5b1
   protein/DNA complex; complexed with dcp, mg, mn, so4

Details for d1lv5b2

PDB Entry: 1lv5, 1.95 Å

PDB Description: Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP

PDB Compounds: (B:) DNA polymerase I

SCOPe Domain Sequences for d1lv5b2:

Sequence; same for both SEQRES and ATOM records:

>d1lv5b2 e.8.1.1 (B:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni
nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi
egllkvvrpdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl
ifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakav
nfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllh
rrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqv
hdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

Timeline for d1lv5b2:

• d1lv5b2 first appeared in SCOP 1.65
  
• d1lv5b2 appears in SCOPe 2.02
  
• d1lv5b2 appears in SCOPe 2.04
  
• d1lv5b2 appears in the current release, SCOPe 2.08