Lineage for d1k1yb3 (1k1y B:2-310)

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1833668Fold c.6: 7-stranded beta/alpha barrel [51988] (3 superfamilies)
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands
  4. 1833746Superfamily c.6.2: Glycoside hydrolase/deacetylase [88713] (9 families) (S)
    in the different families beta-barrels are similarly distorted but may vary in the number of strands
  5. 1833810Family c.6.2.2: 4-alpha-glucanotransferase, N-terminal domain [89554] (1 protein)
    family 57 glycoside hydrolase; overall domain organization is similar to that of the alpha-mannosidase family
    automatically mapped to Pfam PF03065
  6. 1833811Protein 4-alpha-glucanotransferase, N-terminal domain [89555] (1 species)
  7. 1833812Species Thermococcus litoralis [TaxId:2265] [89556] (3 PDB entries)
  8. 1833816Domain d1k1yb3: 1k1y B:2-310 [84290]
    Other proteins in same PDB: d1k1ya1, d1k1ya2, d1k1yb1, d1k1yb2
    complexed with acr, ca, mal, trs

Details for d1k1yb3

PDB Entry: 1k1y (more details), 2.4 Å

PDB Description: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase complexed with acarbose
PDB Compounds: (B:) 4-alpha-glucanotransferase

SCOPe Domain Sequences for d1k1yb3:

Sequence; same for both SEQRES and ATOM records: (download)

>d1k1yb3 c.6.2.2 (B:2-310) 4-alpha-glucanotransferase, N-terminal domain {Thermococcus litoralis [TaxId: 2265]}

SCOPe Domain Coordinates for d1k1yb3:

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Timeline for d1k1yb3: