SCOPe 2.08: Domain d1k1yb2: 1k1y B:385-659

Lineage for d1k1yb2 (1k1y B:385-659)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.30: Supersandwich [49993] (3 superfamilies)
   sandwich; 18 strands in 2 sheets

4. Superfamily b.30.5: Galactose mutarotase-like [74650] (12 families)
   probable carbohydrate-binding domain in enzymes acting on sugars

5. Family b.30.5.8: 4-alpha-glucanotransferase, C-terminal domain [89286] (1 protein)
   family 57 glycoside hydrolase; overall domain organization is similar to that of the alpha-mannosidase family
   automatically mapped to Pfam PF09095

6. Protein 4-alpha-glucanotransferase, C-terminal domain [89287] (1 species)

7. Species Thermococcus litoralis [TaxId:2265] [89288] (3 PDB entries)

8. Domain d1k1yb2: 1k1y B:385-659 [84289]
   Other proteins in same PDB: d1k1ya1, d1k1ya3, d1k1yb1, d1k1yb3
   complexed with ca, trs

Details for d1k1yb2

PDB Entry: 1k1y, 2.4 Å

PDB Description: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase complexed with acarbose

PDB Compounds: (B:) 4-alpha-glucanotransferase

SCOPe Domain Sequences for d1k1yb2:

Sequence, based on SEQRES records:

>d1k1yb2 b.30.5.8 (B:385-659) 4-alpha-glucanotransferase, C-terminal domain {Thermococcus litoralis [TaxId: 2265]}
kpenkildvdfdgraeimvendgfiatikphyggsifelsskrkavnyndvlprrwehyh
evpeatkpekeseegiasihelgkqipeeirrelaydwqlrailqdhfikpeetldnyrl
vkyhelgdfvnqpyeyemiengvklwreggvyaeekiparvekkieltedgfiakyrvll
ekpykalfgveinlavhsvmekpeefeakefevndpygigkvrieldkaakvwkfpiktl
sqseagwdfiqqgvsytmlfpiekeleftvrfrel

Sequence, based on observed residues (ATOM records):

>d1k1yb2 b.30.5.8 (B:385-659) 4-alpha-glucanotransferase, C-terminal domain {Thermococcus litoralis [TaxId: 2265]}
kpenkildvdfdgraeimvendgfiatikphyggsifelsskrkavnyndvlprrwehyh
evqipeeirrelaydwqlrailqdhfikpeetldnyrlvkyhelgdfvnqpyeyemieng
vklwreggvyaeekiparvekkieltedgfiakyrvllekpykalfgveinlavhsvmek
peefeakefevndpygigkvrieldkaakvwkfpiktlsqseagwdfiqqgvsytmlfpi
ekeleftvrfrel

Timeline for d1k1yb2:

• d1k1yb2 first appeared in SCOP 1.65
  
• d1k1yb2 appears in SCOPe 2.07