SCOPe 2.08: Domain d1jalb1: 1jal B:1-278

Lineage for d1jalb1 (1jal B:1-278)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.8: G proteins [52592] (81 proteins)
   core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest

6. Protein YchF GTP-binding protein N-terminal domain [82410] (2 species)
   Member of the Obg family of GTPases; contains an alpha-hairpin insert subdomain

7. Species Haemophilus influenzae [TaxId:727] [89666] (1 PDB entry)
   HI0393

8. Domain d1jalb1: 1jal B:1-278 [84140]
   Other proteins in same PDB: d1jala2, d1jalb2
   structural genomics
   has additional subdomain(s) that are not in the common domain

Details for d1jalb1

PDB Entry: 1jal, 2.4 Å

PDB Description: ychf protein (hi0393)

PDB Compounds: (B:) YchF protein

SCOPe Domain Sequences for d1jalb1:

Sequence, based on SEQRES records:

>d1jalb1 c.37.1.8 (B:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}
mgfkcgivglpnvgkstlfnaltkagieaanypfctiepntgvvpmpdprldalaeivkp
erilpttmefvdiaglvagaskgeglgnkflaniretdaighvvrcfenddivhvagkid
plddidtintelaladldsceraiqrlqkrakggdkeakfelsvmekilpvlenagmirs
vgldkeelqaiksynfltlkptmyianvnedgfennpyldrvreiaakegavvvpvcaai
eseiaelddeekveflqdlgieepglnrviragyalln

Sequence, based on observed residues (ATOM records):

>d1jalb1 c.37.1.8 (B:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}
mgfkcgivglpnvgkstlfnaltkatgvvpmpdprldalaeivkperilpttmefvdiag
lvagaskgeglgnkflaniretdaighvvrcfelddidtintelaladldsceraiqrlq
krakggdkeakfelsvmekilpvlenagmirsvgldkeelqaiksynfltlkptmyianv
nedgfennpyldrvreiaakegavvvpvcaaieseiaelddeekveflqdlgieepglnr
viragyalln

Timeline for d1jalb1:

• d1jalb1 first appeared in SCOP 1.65
  
• d1jalb1 appears in SCOPe 2.07