SCOPe 2.06: Domain d1j1nb_: 1j1n B:

Lineage for d1j1nb_ (1j1n B:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)

6. Protein Alginate-binding periplasmic protein AlgQ2 [69624] (1 species)

7. Species Sphingomonas sp. [TaxId:28214] [69625] (4 PDB entries)

8. Domain d1j1nb_: 1j1n B: [83979]
   complexed with ca

Details for d1j1nb_

PDB Entry: 1j1n, 1.6 Å

PDB Description: structure analysis of algq2, a macromolecule(alginate)-binding periplasmic protein of sphingomonas sp. a1., complexed with an alginate tetrasaccharide

PDB Compounds: (B:) AlgQ2

SCOPe Domain Sequences for d1j1nb_:

Sequence; same for both SEQRES and ATOM records:

>d1j1nb_ c.94.1.1 (B:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]}
keatwvtdkpltlkihmhfrdkwvwdenwpvakesfrltnvklqsvankaatnsqeqfnl
mmasgdlpdvvggdnlkdkfiqygqegafvplnklidqyaphikaffkshpeveraikap
dgniyfipyvpdgvvargyfiredwlkklnlkppqnidelytvlkafkekdpngngkade
vpfidrhpdevfrlvnfwgarssgsdnymdfyidngrvkhpwaetafrdgmkhvaqwyke
glidkeiftrkakareqmfggnlggfthdwfastmtfneglaktvpgfklipiapptnsk
gqrweedsrqkvrpdgwaitvknknpvetikffdfyfsrpgrdisnfgvpgvtydikngk
avfkdsvlkspqpvnnqlydmgaqipigfwqdydyerqwttpeaqagidmyvkgkyvmpg
fegvnmtreeraiydkywadvrtymyemgqawvmgtkdvdktwdeyqrqlklrglyqvlq
mmqqaydrqykn

Timeline for d1j1nb_:

• d1j1nb_ first appeared in SCOP 1.65
  
• d1j1nb_ appears in SCOPe 2.05
  
• d1j1nb_ appears in SCOPe 2.07
  
• d1j1nb_ appears in the current release, SCOPe 2.08