SCOPe 2.08: Domain d1gqqa3: 1gqq A:107-321

Lineage for d1gqqa3 (1gqq A:107-321)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families)
   has extra strand located between strands 1 and 2

5. Family c.72.2.1: MurCDEF [53624] (5 proteins)
   automatically mapped to Pfam PF08245

6. Protein UDP-N-acetylmuramate-alanine ligase MurC [82520] (2 species)

7. Species Haemophilus influenzae [TaxId:727] [89776] (4 PDB entries)

8. Domain d1gqqa3: 1gqq A:107-321 [83301]
   Other proteins in same PDB: d1gqqa1, d1gqqa2, d1gqqb1, d1gqqb2

Details for d1gqqa3

PDB Entry: 1gqq, 3.1 Å

PDB Description: murc - crystal structure of the apo-enzyme from haemophilus influenzae

PDB Compounds: (A:) udp-n-acetylmuramate-l-alanine ligase

SCOPe Domain Sequences for d1gqqa3:

Sequence, based on SEQRES records:

>d1gqqa3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
raqmlaeimrfrhgiavagthgkttttamismiytqakldptfvngglvksagknahlga
sryliaeadesdasflhlqpmvsvvtnmepdhmdtyegdfekmkatyvkflhnlpfygla
vmcaddpvlmelvpkvgrqvitygfseqadyriedyeqtgfqghytvicpnnerinvlln
vpgkhnalnataalavakeegianeailealadfq

Sequence, based on observed residues (ATOM records):

>d1gqqa3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
raqmlaeimrfrhgiavagthgkttttamismiytqakldptfvsryliaeadeflhlqp
mvsvvtnmefekmkatyvkflhnlpfyglavmcaddpvlmelvpkvgrqvitygfseqad
yriedyeqtgfqghytvicpnnerinvllnvpgkhnalnataalavakeegianeailea
ladfq

Timeline for d1gqqa3:

• d1gqqa3 first appeared in SCOP 1.65
  
• d1gqqa3 appears in SCOPe 2.07