SCOP 1.65: Domain d2r04.1: 2r04 4:,2:

Lineage for d2r04.1 (2r04 4:,2:)

1. Root: SCOP 1.65

2. Class b: All beta proteins [48724] (126 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (7 families)

5. Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (9 proteins)
   the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
   there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

6. Protein Rhinovirus coat proteins [49670] (5 species)

7. Species Human rhinovirus B 14 (HRV-14) [TaxId:12131] [49671] (28 PDB entries)

8. Domain d2r04.1: 2r04 4:,2: [83138]

Details for d2r04.1

PDB Entry: 2r04, 3 Å

PDB Description: structural analysis of antiviral agents that interact with the capsid of human rhinoviruses

SCOP Domain Sequences for d2r04.1:

Sequence; same for both SEQRES and ATOM records:

>g2r04.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14)}
inyykdaastssagqslsmdpskftepvkdlmlkgapalnXgysdrvqqitlgnstittq
eaanavvcyaewpeylpdvdasdvnktskpdtsvcrfytldsktwttgskgwcwklpdal
kdmgvfgqnmffhslgrsgytvhvqcnatkfhsgcllvvvipehqlasheggnvsvkytf
thpgergidlssanevggpvkdvlynmngtllgnllifphqfinlrtnntativipyins
vpidsmtrhnnvslmvipiapltvptgatpslpitvtiapmctefsgirsksivpq

Timeline for d2r04.1:

• d2r04.1 is new in SCOP 1.65
  
• d2r04.1 appears in SCOP 1.67
  
• d2r04.1 appears in the current release, SCOPe 2.08