SCOPe 2.06: Domain d2plv.1: 2plv 4:,2:

Lineage for d2plv.1 (2plv 4:,2:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
   the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
   there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

6. Protein Poliovirus coat proteins [49666] (3 species)

7. Species Poliovirus type 1, strain Mahoney [TaxId:12080] [49667] (12 PDB entries)

8. Domain d2plv.1: 2plv 4:,2: [83137]
   complexed with myr, sph

Details for d2plv.1

PDB Entry: 2plv, 2.88 Å

PDB Description: structural factors that control conformational transitions and serotype specificity in type 3 poliovirus

PDB Compounds: (2:) human poliovirus type 1 (subunit vp2), (4:) human poliovirus type 1 (subunit vp4)

SCOPe Domain Sequences for d2plv.1:

Sequence, based on SEQRES records:

>g2plv.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
gaqvssqkvgahensnrayggstinyttinyyrdsasnaaskqdfsqdpskftepikdvl
iktapmlnXeacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqpte
pdvaacrfytldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnas
kfhqgalgvfavpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfc
pvdyllgngtllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailpla
plnfasesspeipitltiapmccefnglrnitlprlq

Sequence, based on observed residues (ATOM records):

>g2plv.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
gaqvssqkvgahensnstinyttinyyrdsasnaaskqdfsqdpskftepikdvliktap
mlnXeacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqptepdvaa
crfytldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnaskfhqg
algvfavpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfcpvdyl
lgngtllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailplaplnfa
sesspeipitltiapmccefnglrnitlprlq

Timeline for d2plv.1:

• d2plv.1 first appeared in SCOP 1.65
  
• d2plv.1 appears in SCOPe 2.05
  
• d2plv.1 appears in SCOPe 2.07
  
• d2plv.1 appears in the current release, SCOPe 2.08