Lineage for d1rvf.1 (1rvf 4:,2:)

  1. Root: SCOP 1.67
  2. 362614Class b: All beta proteins [48724] (141 folds)
  3. 382736Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 382819Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (8 families) (S)
  5. 382820Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (9 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 382934Protein Rhinovirus coat proteins [49670] (5 species)
  7. 382983Species Human rhinovirus B 14 (HRV-14) [TaxId:12131] [49671] (30 PDB entries)
  8. 383071Domain d1rvf.1: 1rvf 4:,2: [83122]
    Other proteins in same PDB: d1rvfh_, d1rvfl_

Details for d1rvf.1

PDB Entry: 1rvf (more details), 4 Å

PDB Description: fab complexed with intact human rhinovirus
PDB Compounds: (2:) , (4:)

SCOP Domain Sequences for d1rvf.1:

Sequence; same for both SEQRES and ATOM records: (download)

>g1rvf.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14)}

SCOP Domain Coordinates for d1rvf.1:

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(The format of our PDB-style files is described here.)

Timeline for d1rvf.1: