Class b: All beta proteins [48724] (176 folds) |
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) |
Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins) the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2 there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus) |
Protein Poliovirus coat proteins [49666] (3 species) |
Species Poliovirus type 1, strain Mahoney [TaxId:12080] [49667] (12 PDB entries) |
Domain d1po1.1: 1po1 4:,2: [83102] protein/RNA complex; complexed with j80, myr |
PDB Entry: 1po1 (more details), 2.9 Å
SCOPe Domain Sequences for d1po1.1:
Sequence, based on SEQRES records: (download)
>g1po1.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type 1, strain Mahoney [TaxId: 12080]} gaqvssqkvgahensnrayggstinyttinyyrdsasnaaskqdfsqdpskftepikdvl iktapmlnXeacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqpte pdvaacrfytldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnas kfhqgalgvfavpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfc pvdyllgngtllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailpla plnfasesspeipitltiapmccefnglrnitlprlq
>g1po1.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type 1, strain Mahoney [TaxId: 12080]} gaqvssqkvgahensstinyttinyyrdsasnaaskqdfsqdpskftepikdvliktapm lnXeacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqptepdvaac rfytldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnaskfhqga lgvfavpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfcpvdyll gngtllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailplaplnfas esspeipitltiapmccefnglrnitlprlq
Timeline for d1po1.1:
View in 3D Domains from other chains: (mouse over for more information) d1po11_, d1po11_, d1po13_, d1po13_ |