SCOP 1.65: Domain d1go3m1: 1go3 M:79-181

Lineage for d1go3m1 (1go3 M:79-181)

1. Root: SCOP 1.65

2. Class b: All beta proteins [48724] (126 folds)

3. Fold b.40: OB-fold [50198] (9 superfamilies)
   barrel, closed or partly opened n=5, S=10 or S=8; greek-key

4. Superfamily b.40.4: Nucleic acid-binding proteins [50249] (11 families)

5. Family b.40.4.5: Cold shock DNA-binding domain-like [50282] (16 proteins)
   barrel, closed; n=5, S=8

6. Protein C-terminal domain of RNA polymerase II subunit RBP4 (RpoE) [88670] (1 species)

7. Species Archaeon Methanococcus jannaschii [TaxId:2190] [88671] (1 PDB entry)

8. Domain d1go3m1: 1go3 M:79-181 [83056]
   Other proteins in same PDB: d1go3e2, d1go3f_, d1go3m2, d1go3n_

Details for d1go3m1

PDB Entry: 1go3, 1.75 Å

PDB Description: structure of an archeal homolog of the eukaryotic rna polymerase ii rpb4/rpb7 complex

SCOP Domain Sequences for d1go3m1:

Sequence, based on SEQRES records:

>d1go3m1 b.40.4.5 (M:79-181) C-terminal domain of RNA polymerase II subunit RBP4 (RpoE) {Archaeon Methanococcus jannaschii}
pemyeliegevvdvvefgsfvrlgpldglihvsqimddyvsydpkreaiigketgkvlei
gdyvrarivaislkaerkrgskialtmrqpylgklewieeeka

Sequence, based on observed residues (ATOM records):

>d1go3m1 b.40.4.5 (M:79-181) C-terminal domain of RNA polymerase II subunit RBP4 (RpoE) {Archaeon Methanococcus jannaschii}
pemyeliegevvdvvefgsfvrlgpldglihvsqimddyvsydpkreaiigketgkvlei
gdyvrarivaislskialtmrqpylgklewieeeka

Timeline for d1go3m1:

• d1go3m1 is new in SCOP 1.65
  
• d1go3m1 appears in SCOP 1.67
  
• d1go3m1 appears in the current release, SCOPe 2.08