SCOPe 2.08: Domain d1go3m1: 1go3 M:79-181

Lineage for d1go3m1 (1go3 M:79-181)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.40: OB-fold [50198] (17 superfamilies)
   barrel, closed or partly opened n=5, S=10 or S=8; greek-key

4. Superfamily b.40.4: Nucleic acid-binding proteins [50249] (18 families)

5. Family b.40.4.5: Cold shock DNA-binding domain-like [50282] (36 proteins)
   barrel, closed; n=5, S=8

6. Protein C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) [88670] (4 species)

7. Species Methanococcus jannaschii [TaxId:2190] [88671] (1 PDB entry)

8. Domain d1go3m1: 1go3 M:79-181 [83056]
   Other proteins in same PDB: d1go3e2, d1go3f_, d1go3m2, d1go3n_
   protein/DNA complex; protein/RNA complex
   has additional insertions and/or extensions that are not grouped together

Details for d1go3m1

PDB Entry: 1go3, 1.75 Å

PDB Description: structure of an archeal homolog of the eukaryotic rna polymerase ii rpb4/rpb7 complex

PDB Compounds: (M:) DNA-directed RNA polymerase subunit e

SCOPe Domain Sequences for d1go3m1:

Sequence, based on SEQRES records:

>d1go3m1 b.40.4.5 (M:79-181) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Methanococcus jannaschii [TaxId: 2190]}
pemyeliegevvdvvefgsfvrlgpldglihvsqimddyvsydpkreaiigketgkvlei
gdyvrarivaislkaerkrgskialtmrqpylgklewieeeka

Sequence, based on observed residues (ATOM records):

>d1go3m1 b.40.4.5 (M:79-181) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Methanococcus jannaschii [TaxId: 2190]}
pemyeliegevvdvvefgsfvrlgpldglihvsqimddyvsydpkreaiigketgkvlei
gdyvrarivaislskialtmrqpylgklewieeeka

Timeline for d1go3m1:

• d1go3m1 first appeared in SCOP 1.65
  
• d1go3m1 appears in SCOPe 2.07