![]() | Class b: All beta proteins [48724] (178 folds) |
![]() | Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
![]() | Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) ![]() |
![]() | Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins) the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2 there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus) |
![]() | Protein Aphthovirus (Foot-and-mouth disease virus) coat proteins [49659] (1 species) |
![]() | Species FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId:12110] [49660] (4 PDB entries) |
![]() | Domain d1fod.1: 1fod 4:,2: [83052] |
PDB Entry: 1fod (more details), 2.6 Å
SCOPe Domain Sequences for d1fod.1:
Sequence, based on SEQRES records: (download)
>g1fod.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]} sgntgsiinnyymqqyqnsmdtqlgdnaisggsnegstdttsthttntqnndwfsklass afsglfgallaXeettlledrilttrnghttsttqssvgvtygyataedfvsgpntsgle trvvqaerffkthlfdwvtsdsfgrchllelptdhkgvygsltdsyaymrngwdvevtav gnqfnggcllvamvpelcsiqkrelyqltlfphqfinprtnmtahitvpfvgvnrydqyk vhkpwtlvvmvvapltvntegapqikvyaniaptnvhvagefpske
>g1fod.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]} sgntgsiinnyymqqyqnsmdtqlgdndwfsklassafsglfgallaXeettlledrilt trnghttsttqssvgvtygyataedfvsgpntsgletrvvqaerffkthlfdwvtsdsfg rchllelptdhkgvygsltdsyaymrngwdvevtavgnqfnggcllvamvpelcsiqkre lyqltlfphqfinprtnmtahitvpfvgvnrydqykvhkpwtlvvmvvapltvntegapq ikvyaniaptnvhvagefpske
Timeline for d1fod.1:
![]() Domains from other chains: (mouse over for more information) d1fod1_, d1fod1_, d1fod3_, d1fod3_ |