SCOP 1.65: Domain d1bbt.1: 1bbt 4:,2:

Lineage for d1bbt.1 (1bbt 4:,2:)

1. Root: SCOP 1.65

2. Class b: All beta proteins [48724] (126 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (7 families)

5. Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (9 proteins)
   the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
   there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

6. Protein Aphthovirus (Foot-and-mouth desease virus) coat proteins [49659] (1 species)

7. Species FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId:12110] [49660] (4 PDB entries)

8. Domain d1bbt.1: 1bbt 4:,2: [83039]

Details for d1bbt.1

PDB Entry: 1bbt, 2.6 Å

PDB Description: methods used in the structure determination of foot and mouth disease virus

SCOP Domain Sequences for d1bbt.1:

Sequence, based on SEQRES records:

>g1bbt.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth desease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860}
sgntgsiinnyymqqyqnsmdtqlgndaisggsnegstdttsthttntqnndwfsklass
afsglfgallaXlledrilttrnghttsttqssvgvtygyataedfvsgpntsgletrvv
qaerffkthlfdwvtsdsfgrchllelptdhkgvygsltdsyaymrngwdvevtavgnqf
nggcllvamvpelcsiqkrelyqltlfphqfinprtnmtahitvpfvgvnrydqykvhkp
wtlvvmvvapltvntegapqikvyaniaptnvhvagefpske

Sequence, based on observed residues (ATOM records):

>g1bbt.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth desease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860}
sgntgsiinnyymqqyqnsmdtqlgndwfsklassafsglfgallaXlledrilttrngh
ttsttqssvgvtygyataedfvsgpntsgletrvvqaerffkthlfdwvtsdsfgrchll
elptdhkgvygsltdsyaymrngwdvevtavgnqfnggcllvamvpelcsiqkrelyqlt
lfphqfinprtnmtahitvpfvgvnrydqykvhkpwtlvvmvvapltvntegapqikvya
niaptnvhvagefpske

Timeline for d1bbt.1:

• d1bbt.1 is new in SCOP 1.65
  
• d1bbt.1 appears in SCOP 1.67
  
• d1bbt.1 appears in the current release, SCOPe 2.08