SCOPe 2.08: Protein: Topoisomerase VI-B subunit

Lineage for Protein: Topoisomerase VI-B subunit

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families)
Family d.14.1.3: DNA gyrase/MutL, second domain [54224] (6 proteins)
Protein Topoisomerase VI-B subunit [82577] (1 species)
contains an H2TH domain inserted in front of this domain and after the N-terminal ATPase domain

Species:

Sulfolobus shibatae [TaxId:2286] [82578] (7 PDB entries)
1. Domain for 1mu5:
  - Domain d1mu5a2: 1mu5 A:307-470 [79473]
    Other proteins in same PDB: d1mu5a1, d1mu5a3
    complexed with ca
2. Domains for 1mx0:
  1. Domain d1mx0a2: 1mx0 A:307-467 [79619]
    Other proteins in same PDB: d1mx0a1, d1mx0a3, d1mx0b1, d1mx0b3, d1mx0c1, d1mx0c3, d1mx0d1, d1mx0d3, d1mx0e1, d1mx0e3, d1mx0f1, d1mx0f3
    complexed with anp, mg, na
  2. Domain d1mx0b2: 1mx0 B:307-458 [79622]
    Other proteins in same PDB: d1mx0a1, d1mx0a3, d1mx0b1, d1mx0b3, d1mx0c1, d1mx0c3, d1mx0d1, d1mx0d3, d1mx0e1, d1mx0e3, d1mx0f1, d1mx0f3
    complexed with anp, mg, na
  3. Domain d1mx0c2: 1mx0 C:307-469 [79625]
    Other proteins in same PDB: d1mx0a1, d1mx0a3, d1mx0b1, d1mx0b3, d1mx0c1, d1mx0c3, d1mx0d1, d1mx0d3, d1mx0e1, d1mx0e3, d1mx0f1, d1mx0f3
    complexed with anp, mg, na
  4. Domain d1mx0d2: 1mx0 D:307-464 [79628]
    Other proteins in same PDB: d1mx0a1, d1mx0a3, d1mx0b1, d1mx0b3, d1mx0c1, d1mx0c3, d1mx0d1, d1mx0d3, d1mx0e1, d1mx0e3, d1mx0f1, d1mx0f3
    complexed with anp, mg, na
  5. Domain d1mx0e2: 1mx0 E:307-461 [79631]
    Other proteins in same PDB: d1mx0a1, d1mx0a3, d1mx0b1, d1mx0b3, d1mx0c1, d1mx0c3, d1mx0d1, d1mx0d3, d1mx0e1, d1mx0e3, d1mx0f1, d1mx0f3
    complexed with anp, mg, na
  6. Domain d1mx0f2: 1mx0 F:307-463 [79634]
    Other proteins in same PDB: d1mx0a1, d1mx0a3, d1mx0b1, d1mx0b3, d1mx0c1, d1mx0c3, d1mx0d1, d1mx0d3, d1mx0e1, d1mx0e3, d1mx0f1, d1mx0f3
    complexed with anp, mg, na
3. Domain for 1z59:
  - Domain d1z59a2: 1z59 A:307-470 [124456]
    Other proteins in same PDB: d1z59a1, d1z59a3
    automated match to d2hkja2
    complexed with adp, mg
4. Domains for 1z5a:
  1. Domain d1z5aa2: 1z5a A:307-469 [124459]
    Other proteins in same PDB: d1z5aa1, d1z5aa3, d1z5ab1, d1z5ab3
    automated match to d2hkja2
    complexed with adp, mg
  2. Domain d1z5ab2: 1z5a B:307-463 [124462]
    Other proteins in same PDB: d1z5aa1, d1z5aa3, d1z5ab1, d1z5ab3
    automated match to d2hkja2
    complexed with adp, mg
5. Domains for 1z5b:
  1. Domain d1z5ba2: 1z5b A:307-469 [124465]
    Other proteins in same PDB: d1z5ba1, d1z5ba3, d1z5bb1, d1z5bb3
    automated match to d2hkja2
    complexed with adp, alf, mg, so4
  2. Domain d1z5bb2: 1z5b B:307-463 [124468]
    Other proteins in same PDB: d1z5ba1, d1z5ba3, d1z5bb1, d1z5bb3
    automated match to d2hkja2
    complexed with adp, alf, mg, so4
6. Domains for 1z5c:
  1. Domain d1z5ca2: 1z5c A:307-469 [124471]
    Other proteins in same PDB: d1z5ca1, d1z5ca3, d1z5cb1, d1z5cb3
    automated match to d2hkja2
    complexed with adp, mg, po4
  2. Domain d1z5cb2: 1z5c B:307-463 [124474]
    Other proteins in same PDB: d1z5ca1, d1z5ca3, d1z5cb1, d1z5cb3
    automated match to d2hkja2
    complexed with adp, mg, po4
7. Domain for 2hkj:
  - Domain d2hkja2: 2hkj A:307-470 [136554]
    Other proteins in same PDB: d2hkja1, d2hkja3
    automated match to d2hkja2
    complexed with dms, mg, rdc

More info for Protein Topoisomerase VI-B subunit from d.14.1.3: DNA gyrase/MutL, second domain

Timeline for Protein Topoisomerase VI-B subunit from d.14.1.3: DNA gyrase/MutL, second domain:

Protein Topoisomerase VI-B subunit from d.14.1.3: DNA gyrase/MutL, second domain first appeared in SCOP 1.63, called Protein Topoisomerase IV-B subunit from d.14.1.3: DNA gyrase/MutL, second domain
Protein Topoisomerase VI-B subunit from d.14.1.3: DNA gyrase/MutL, second domain appears in SCOPe 2.07