SCOPe 2.08: Protein: UDP-N-acetylmuramate-alanine ligase MurC

Lineage for Protein: UDP-N-acetylmuramate-alanine ligase MurC

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.72: Ribokinase-like [53612] (3 superfamilies)
core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
potential superfamily: members of this fold have similar functions but different ATP-binding sites

Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families)
has extra strand located between strands 1 and 2
Family c.72.2.1: MurCDEF [53624] (5 proteins)
automatically mapped to Pfam PF08245
Protein UDP-N-acetylmuramate-alanine ligase MurC [82520] (2 species)

Species:

Haemophilus influenzae [TaxId:727] [89776] (4 PDB entries)
1. Domains for 1gqq:
  1. Domain d1gqqa3: 1gqq A:107-321 [83301]
    Other proteins in same PDB: d1gqqa1, d1gqqa2, d1gqqb1, d1gqqb2
  2. Domain d1gqqb3: 1gqq B:107-321 [83304]
    Other proteins in same PDB: d1gqqa1, d1gqqa2, d1gqqb1, d1gqqb2
2. Domains for 1gqy:
  1. Domain d1gqya3: 1gqy A:107-321 [83307]
    Other proteins in same PDB: d1gqya1, d1gqya2, d1gqyb1, d1gqyb2
    complexed with acp, mg
  2. Domain d1gqyb3: 1gqy B:107-321 [83310]
    Other proteins in same PDB: d1gqya1, d1gqya2, d1gqyb1, d1gqyb2
    complexed with acp, mg
3. Domains for 1p31:
  1. Domain d1p31a3: 1p31 A:107-321 [87724]
    Other proteins in same PDB: d1p31a1, d1p31a2, d1p31b1, d1p31b2
    complexed with epu, mg
  2. Domain d1p31b3: 1p31 B:107-321 [87727]
    Other proteins in same PDB: d1p31a1, d1p31a2, d1p31b1, d1p31b2
    complexed with epu, mg
4. Domains for 1p3d:
  1. Domain d1p3da3: 1p3d A:107-321 [87730]
    Other proteins in same PDB: d1p3da1, d1p3da2, d1p3db1, d1p3db2
    complexed with anp, mn, uma
  2. Domain d1p3db3: 1p3d B:107-321 [87733]
    Other proteins in same PDB: d1p3da1, d1p3da2, d1p3db1, d1p3db2
    complexed with anp, mn, uma
Thermotoga maritima [TaxId:2336] [82521] (1 PDB entry)
TM0231
- Domain for 1j6u:
  - Domain d1j6ua3: 1j6u A:89-295 [77096]
    Other proteins in same PDB: d1j6ua1, d1j6ua2, d1j6ua4
    structural genomics

More info for Protein UDP-N-acetylmuramate-alanine ligase MurC from c.72.2.1: MurCDEF

Timeline for Protein UDP-N-acetylmuramate-alanine ligase MurC from c.72.2.1: MurCDEF:

Protein UDP-N-acetylmuramate-alanine ligase MurC from c.72.2.1: MurCDEF first appeared in SCOP 1.63
Protein UDP-N-acetylmuramate-alanine ligase MurC from c.72.2.1: MurCDEF appears in SCOPe 2.07