SCOPe 2.06: Protein: DNA repair protein Rad51, catalytic domain

Lineage for Protein: DNA repair protein Rad51, catalytic domain

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families)
division into families based on beta-sheet topologies
Family c.37.1.11: RecA protein-like (ATPase-domain) [52670] (21 proteins)
core: mixed beta-sheet of 8 strands, order 32451678; strand 7 is antiparallel to the rest
Protein DNA repair protein Rad51, catalytic domain [82412] (7 species)

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [110554] (2 PDB entries)
Uniprot P25454 81-395
1. Domains for 1szp:
  1. Domain d1szpa2: 1szp A:145-395 [106177]
    Other proteins in same PDB: d1szpa1, d1szpb1, d1szpc1, d1szpd1, d1szpe1, d1szpf1
    complexed with so4
  2. Domain d1szpb2: 1szp B:145-395 [106179]
    Other proteins in same PDB: d1szpa1, d1szpb1, d1szpc1, d1szpd1, d1szpe1, d1szpf1
    complexed with so4
  3. Domain d1szpc2: 1szp C:145-395 [106181]
    Other proteins in same PDB: d1szpa1, d1szpb1, d1szpc1, d1szpd1, d1szpe1, d1szpf1
    complexed with so4
  4. Domain d1szpd2: 1szp D:145-395 [106183]
    Other proteins in same PDB: d1szpa1, d1szpb1, d1szpc1, d1szpd1, d1szpe1, d1szpf1
    complexed with so4
  5. Domain d1szpe2: 1szp E:145-395 [106185]
    Other proteins in same PDB: d1szpa1, d1szpb1, d1szpc1, d1szpd1, d1szpe1, d1szpf1
    complexed with so4
  6. Domain d1szpf2: 1szp F:145-395 [106187]
    Other proteins in same PDB: d1szpa1, d1szpb1, d1szpc1, d1szpd1, d1szpe1, d1szpf1
    complexed with so4
2. Domain for 3lda:
  - Domain d3ldaa2: 3lda A:145-396 [232825]
    Other proteins in same PDB: d3ldaa1
    automated match to d1szpa2
    complexed with cl; mutant
Human (Homo sapiens) [TaxId:9606] [82413] (1 PDB entry)
- Domain for 1n0w:
  - Domain d1n0wa_: 1n0w A: [79772]
    Other proteins in same PDB: d1n0wb_
    complex with BRCA2 BRC4 repeat peptide
    protein/DNA complex; complexed with cl, edo, mg

Methanococcus voltae [TaxId:2188] [110555] (14 PDB entries)
Uniprot O73948

Domain for 1t4g:
- Domain d1t4ga2: 1t4g A:65-322 [106419]
  Other proteins in same PDB: d1t4ga1
  complexed with anp, mg
Domain for 1xu4:
- Domain d1xu4a2: 1xu4 A:65-322 [116046]
  Other proteins in same PDB: d1xu4a1
  complexed with anp, k, mg
Domain for 1z4b:
- Domain d1z4ba2: 1z4b A:65-322 [303429]
  Other proteins in same PDB: d1z4ba1
  automated match to d1t4ga2
  complexed with adp, k, mg
Domain for 1z4c:
- Domain d1z4ca2: 1z4c A:65-322 [303431]
  Other proteins in same PDB: d1z4ca1
  automated match to d1t4ga2
  complexed with anp, k, mg
Domain for 1z4d:
- Domain d1z4da2: 1z4d A:65-322 [303433]
  Other proteins in same PDB: d1z4da1
  automated match to d1t4ga2
  complexed with anp, k, mg
Domain for 2b21:
- Domain d2b21a2: 2b21 A:65-322 [127688]
  Other proteins in same PDB: d2b21a1
  automated match to d1t4ga2
  complexed with anp, k, mg
Domain for 2fpk:
- Domain d2fpka2: 2fpk A:65-322 [204255]
  Other proteins in same PDB: d2fpka1
  automated match to d1t4ga2
  complexed with adp, k, mg
Domain for 2fpl:
- Domain d2fpla2: 2fpl A:65-322 [204257]
  Other proteins in same PDB: d2fpla1
  automated match to d1t4ga2
  complexed with anp, k, mg
Domain for 2fpm:
- Domain d2fpma2: 2fpm A:65-322 [204259]
  Other proteins in same PDB: d2fpma1
  automated match to d1t4ga2
  complexed with anp, k, mg
Domain for 2gdj:
- Domain d2gdja_: 2gdj A: [135018]
  automated match to d4dc9a_
  complexed with anp, mg
Domain for 2i1q:
- Domain d2i1qa2: 2i1q A:65-322 [136985]
  Other proteins in same PDB: d2i1qa1
  automated match to d1t4ga2
  complexed with anp, ca, mg, na
Domain for 3fyh:
- Domain d3fyha2: 3fyh A:65-322 [210254]
  Other proteins in same PDB: d3fyha1
  automated match to d1t4ga2
  protein/DNA complex; complexed with adp, mg, na, w
Domains for 4dc9:
1. Domain d4dc9a1: 4dc9 A:61-322 [219675]
  Other proteins in same PDB: d4dc9a2, d4dc9b2, d4dc9c2, d4dc9d2, d4dc9e2, d4dc9f2
  automated match to d1n0wa_
  complexed with no3
2. Domain d4dc9b1: 4dc9 B:61-322 [219676]
  Other proteins in same PDB: d4dc9a2, d4dc9b2, d4dc9c2, d4dc9d2, d4dc9e2, d4dc9f2
  automated match to d1n0wa_
  complexed with no3
3. Domain d4dc9c1: 4dc9 C:61-322 [219677]
  Other proteins in same PDB: d4dc9a2, d4dc9b2, d4dc9c2, d4dc9d2, d4dc9e2, d4dc9f2
  automated match to d1n0wa_
  complexed with no3
4. Domain d4dc9d1: 4dc9 D:61-322 [219678]
  Other proteins in same PDB: d4dc9a2, d4dc9b2, d4dc9c2, d4dc9d2, d4dc9e2, d4dc9f2
  automated match to d1n0wa_
  complexed with no3
5. Domain d4dc9e1: 4dc9 E:61-322 [219679]
  Other proteins in same PDB: d4dc9a2, d4dc9b2, d4dc9c2, d4dc9d2, d4dc9e2, d4dc9f2
  automated match to d1n0wa_
  complexed with no3
6. Domain d4dc9f1: 4dc9 F:61-322 [219680]
  Other proteins in same PDB: d4dc9a2, d4dc9b2, d4dc9c2, d4dc9d2, d4dc9e2, d4dc9f2
  automated match to d1n0wa_
  complexed with no3

Domains for 4qkq:

Domain d4qkqa1: 4qkq A:61-322 [273657]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqb1: 4qkq B:61-322 [273658]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqc1: 4qkq C:61-322 [273661]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqd1: 4qkq D:61-322 [273659]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqe1: 4qkq E:61-322 [273660]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqf1: 4qkq F:61-322 [273662]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqg1: 4qkq G:61-322 [273664]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqh1: 4qkq H:61-322 [273663]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqi1: 4qkq I:61-322 [273666]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqj1: 4qkq J:61-322 [273665]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkqk1: 4qkq K:61-322 [273667]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Domain d4qkql1: 4qkq L:61-322 [273668]
Other proteins in same PDB: d4qkqa2, d4qkqb2, d4qkqc2, d4qkqd2, d4qkqe2, d4qkqf2, d4qkqg2, d4qkqh2, d4qkqi2, d4qkqj2, d4qkqk2, d4qkql2
automated match to d4dc9a_
protein/DNA complex; complexed with 35n, no3

Methanococcus voltae [TaxId:523842] [226807] (1 PDB entry)
- Domain for 3ntu:
  - Domain d3ntua2: 3ntu A:64-322 [214056]
    Other proteins in same PDB: d3ntua1
    automated match to d1pzna2
    complexed with anp, mg, na; mutant
Pyrococcus furiosus [TaxId:2261] [102377] (1 PDB entry)
- Domains for 1pzn:
  1. Domain d1pzna2: 1pzn A:96-349 [95457]
    Other proteins in same PDB: d1pzna1
    complexed with gol, imd, mpd, so4
  2. Domain d1pznb1: 1pzn B:96-349 [95458]
    Other proteins in same PDB: d1pzna1
    complexed with gol, imd, mpd, so4
  3. Domain d1pznc1: 1pzn C:96-349 [95459]
    Other proteins in same PDB: d1pzna1
    complexed with gol, imd, mpd, so4
  4. Domain d1pznd1: 1pzn D:96-349 [95460]
    Other proteins in same PDB: d1pzna1
    complexed with gol, imd, mpd, so4
  5. Domain d1pzne1: 1pzn E:96-349 [95461]
    Other proteins in same PDB: d1pzna1
    complexed with gol, imd, mpd, so4
  6. Domain d1pznf1: 1pzn F:96-349 [95462]
    Other proteins in same PDB: d1pzna1
    complexed with gol, imd, mpd, so4
  7. Domain d1pzng1: 1pzn G:96-349 [95463]
    Other proteins in same PDB: d1pzna1
    complexed with gol, imd, mpd, so4
Sulfolobus solfataricus [TaxId:2287] [225209] (2 PDB entries)
1. Domain for 2dfl:
  - Domain d2dfla2: 2dfl A:73-322 [203986]
    Other proteins in same PDB: d2dfla1
    automated match to d1pzna2
2. Domains for 2zub:
  1. Domain d2zuba2: 2zub A:73-322 [207987]
    Other proteins in same PDB: d2zuba1, d2zubb1
    automated match to d1pzna2
  2. Domain d2zubb2: 2zub B:73-322 [207989]
    Other proteins in same PDB: d2zuba1, d2zubb1
    automated match to d1pzna2
Sulfolobus solfataricus [TaxId:273057] [225378] (1 PDB entry)
- Domains for 2z43:
  1. Domain d2z43a_: 2z43 A: [231689]
    Other proteins in same PDB: d2z43b1, d2z43c1
    automated match to d2z43b2
  2. Domain d2z43b2: 2z43 B:73-324 [207770]
    Other proteins in same PDB: d2z43b1, d2z43c1
    automated match to d1pzna2
  3. Domain d2z43c2: 2z43 C:73-323 [207772]
    Other proteins in same PDB: d2z43b1, d2z43c1
    automated match to d1pzna2

More info for Protein DNA repair protein Rad51, catalytic domain from c.37.1.11: RecA protein-like (ATPase-domain)

Timeline for Protein DNA repair protein Rad51, catalytic domain from c.37.1.11: RecA protein-like (ATPase-domain):

Protein DNA repair protein Rad51, catalytic domain from c.37.1.11: RecA protein-like (ATPase-domain) first appeared in SCOP 1.63, called Protein DNA repair protein Rad51 from c.37.1.11: RecA protein-like (ATPase-domain)
Protein DNA repair protein Rad51, catalytic domain from c.37.1.11: RecA protein-like (ATPase-domain) appears in SCOPe 2.05
Protein DNA repair protein Rad51, catalytic domain from c.37.1.11: RecA protein-like (ATPase-domain) appears in SCOPe 2.07
Protein DNA repair protein Rad51, catalytic domain from c.37.1.11: RecA protein-like (ATPase-domain) appears in the current release, SCOPe 2.08