SCOP 1.73: Protein: Putative shikimate dehydrogenase YdiB

Lineage for Protein: Putative shikimate dehydrogenase YdiB

Root: SCOP 1.73
Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (12 families)

Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (11 proteins)
extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Protein Putative shikimate dehydrogenase YdiB [82305] (1 species)

Species:

Escherichia coli [TaxId:562] [82306] (3 PDB entries)
1. Domains for 1npd:
  1. Domain d1npda1: 1npd A:107-287 [80681]
    Other proteins in same PDB: d1npda2, d1npdb2
  2. Domain d1npdb1: 1npd B:107-288 [80683]
    Other proteins in same PDB: d1npda2, d1npdb2
    structural genomics
    complexed with mse, nad
2. Domains for 1o9b:
  1. Domain d1o9ba1: 1o9b A:107-287 [81237]
    Other proteins in same PDB: d1o9ba2, d1o9bb2
  2. Domain d1o9bb1: 1o9b B:107-287 [81239]
    Other proteins in same PDB: d1o9ba2, d1o9bb2
    complexed with mse, nad, po4
3. Domains for 1vi2:
  1. Domain d1vi2a1: 1vi2 A:107-288 [100726]
    Other proteins in same PDB: d1vi2a2, d1vi2b2
  2. Domain d1vi2b1: 1vi2 B:107-287 [100728]
    Other proteins in same PDB: d1vi2a2, d1vi2b2
    structural genomics
    complexed with nad, so4

More info for Protein Putative shikimate dehydrogenase YdiB from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain

Timeline for Protein Putative shikimate dehydrogenase YdiB from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain:

Protein Putative shikimate dehydrogenase YdiB from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain first appeared in SCOP 1.63
Protein Putative shikimate dehydrogenase YdiB from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain appears in SCOP 1.71
Protein Putative shikimate dehydrogenase YdiB from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain appears in SCOP 1.75
Protein Putative shikimate dehydrogenase YdiB from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain appears in the current release, SCOPe 2.08