Lineage for Species: Pyrococcus abyssi [TaxId: 29292]

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2396390Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 2396391Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 2396392Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (11 proteins)
    forms homo and heteroheptameric ring structures
    Pfam PF01423
  6. 2396393Protein Archaeal homoheptameric Sm protein [63758] (6 species)
  7. 2396504Species Pyrococcus abyssi [TaxId:29292] [82089] (2 PDB entries)

PDB entries in Species: Pyrococcus abyssi [TaxId: 29292]:

  1. Domain(s) for 1h64:
    1. 2396505Domain d1h641_: 1h64 1: [76675]
    2. 2396506Domain d1h642_: 1h64 2: [76676]
    3. 2396507Domain d1h64a_: 1h64 A: [76677]
    4. 2396508Domain d1h64b_: 1h64 B: [76678]
    5. 2396509Domain d1h64c_: 1h64 C: [76679]
    6. 2396510Domain d1h64d_: 1h64 D: [76680]
    7. 2396511Domain d1h64e_: 1h64 E: [76681]
    8. 2396512Domain d1h64f_: 1h64 F: [76682]
    9. 2396513Domain d1h64g_: 1h64 G: [76683]
    10. 2396514Domain d1h64h_: 1h64 H: [76684]
    11. 2396515Domain d1h64i_: 1h64 I: [76685]
    12. 2396516Domain d1h64j_: 1h64 J: [76686]
    13. 2396517Domain d1h64k_: 1h64 K: [76687]
    14. 2396518Domain d1h64l_: 1h64 L: [76688]
    15. 2396519Domain d1h64m_: 1h64 M: [76689]
    16. 2396520Domain d1h64n_: 1h64 N: [76690]
    17. 2396521Domain d1h64o_: 1h64 O: [76691]
    18. 2396522Domain d1h64p_: 1h64 P: [76692]
    19. 2396523Domain d1h64q_: 1h64 Q: [76693]
    20. 2396524Domain d1h64r_: 1h64 R: [76694]
    21. 2396525Domain d1h64s_: 1h64 S: [76695]
    22. 2396526Domain d1h64t_: 1h64 T: [76696]
    23. 2396527Domain d1h64u_: 1h64 U: [76697]
    24. 2396528Domain d1h64v_: 1h64 V: [76698]
    25. 2396529Domain d1h64w_: 1h64 W: [76699]
    26. 2396530Domain d1h64x_: 1h64 X: [76700]
    27. 2396531Domain d1h64y_: 1h64 Y: [76701]
    28. 2396532Domain d1h64z_: 1h64 Z: [76702]
  2. Domain(s) for 1m8v:
    1. 2396533Domain d1m8va1: 1m8v A:103-173 [78814]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    2. 2396534Domain d1m8vb_: 1m8v B: [78815]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    3. 2396535Domain d1m8vc_: 1m8v C: [78816]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    4. 2396536Domain d1m8vd_: 1m8v D: [78817]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    5. 2396537Domain d1m8ve_: 1m8v E: [78818]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    6. 2396538Domain d1m8vf_: 1m8v F: [78819]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    7. 2396539Domain d1m8vg_: 1m8v G: [78820]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    8. 2396540Domain d1m8vh_: 1m8v H: [78821]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    9. 2396541Domain d1m8vi_: 1m8v I: [78822]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    10. 2396542Domain d1m8vj_: 1m8v J: [78823]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    11. 2396543Domain d1m8vk_: 1m8v K: [78824]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    12. 2396544Domain d1m8vl_: 1m8v L: [78825]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    13. 2396545Domain d1m8vm_: 1m8v M: [78826]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u
    14. 2396546Domain d1m8vn_: 1m8v N: [78827]
      Other proteins in same PDB: d1m8va2
      complexed with a uridine heptamer
      protein/RNA complex; complexed with ca, u

More info for Species Pyrococcus abyssi [TaxId:29292] from b.38.1.1 Archaeal homoheptameric Sm protein

Timeline for Species Pyrococcus abyssi [TaxId:29292] from b.38.1.1 Archaeal homoheptameric Sm protein: