Lineage for Species: Archaeon Pyrococcus abyssi

  1. Root: SCOP 1.63
  2. 218896Class b: All beta proteins [48724] (119 folds)
  3. 228326Fold b.38: Sm-like fold [50181] (2 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 228327Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (3 families) (S)
  5. 228328Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (6 protein domains)
    forms homo and heteroheptameric ring structures
  6. 228329Protein Archaeal homoheptameric Sm protein [63758] (5 species)
  7. 228412Species Archaeon Pyrococcus abyssi [TaxId:29292] [82089] (2 PDB entries)

PDB entries in Species: Archaeon Pyrococcus abyssi:

  1. Domain(s) for 1h64:
    1. 228413Domain d1h641_: 1h64 1: [76675]
    2. 228414Domain d1h642_: 1h64 2: [76676]
    3. 228415Domain d1h64a_: 1h64 A: [76677]
    4. 228416Domain d1h64b_: 1h64 B: [76678]
    5. 228417Domain d1h64c_: 1h64 C: [76679]
    6. 228418Domain d1h64d_: 1h64 D: [76680]
    7. 228419Domain d1h64e_: 1h64 E: [76681]
    8. 228420Domain d1h64f_: 1h64 F: [76682]
    9. 228421Domain d1h64g_: 1h64 G: [76683]
    10. 228422Domain d1h64h_: 1h64 H: [76684]
    11. 228423Domain d1h64i_: 1h64 I: [76685]
    12. 228424Domain d1h64j_: 1h64 J: [76686]
    13. 228425Domain d1h64k_: 1h64 K: [76687]
    14. 228426Domain d1h64l_: 1h64 L: [76688]
    15. 228427Domain d1h64m_: 1h64 M: [76689]
    16. 228428Domain d1h64n_: 1h64 N: [76690]
    17. 228429Domain d1h64o_: 1h64 O: [76691]
    18. 228430Domain d1h64p_: 1h64 P: [76692]
    19. 228431Domain d1h64q_: 1h64 Q: [76693]
    20. 228432Domain d1h64r_: 1h64 R: [76694]
    21. 228433Domain d1h64s_: 1h64 S: [76695]
    22. 228434Domain d1h64t_: 1h64 T: [76696]
    23. 228435Domain d1h64u_: 1h64 U: [76697]
    24. 228436Domain d1h64v_: 1h64 V: [76698]
    25. 228437Domain d1h64w_: 1h64 W: [76699]
    26. 228438Domain d1h64x_: 1h64 X: [76700]
    27. 228439Domain d1h64y_: 1h64 Y: [76701]
    28. 228440Domain d1h64z_: 1h64 Z: [76702]
  2. Domain(s) for 1m8v:
    1. 228441Domain d1m8va_: 1m8v A: [78814]
    2. 228442Domain d1m8vb_: 1m8v B: [78815]
    3. 228443Domain d1m8vc_: 1m8v C: [78816]
    4. 228444Domain d1m8vd_: 1m8v D: [78817]
    5. 228445Domain d1m8ve_: 1m8v E: [78818]
    6. 228446Domain d1m8vf_: 1m8v F: [78819]
    7. 228447Domain d1m8vg_: 1m8v G: [78820]
    8. 228448Domain d1m8vh_: 1m8v H: [78821]
    9. 228449Domain d1m8vi_: 1m8v I: [78822]
    10. 228450Domain d1m8vj_: 1m8v J: [78823]
    11. 228451Domain d1m8vk_: 1m8v K: [78824]
    12. 228452Domain d1m8vl_: 1m8v L: [78825]
    13. 228453Domain d1m8vm_: 1m8v M: [78826]
    14. 228454Domain d1m8vn_: 1m8v N: [78827]
      complexed with a uridine heptamer
      complexed with ca, u

More info for Species Archaeon Pyrococcus abyssi [TaxId:29292] from b.38.1.1 Archaeal homoheptameric Sm protein

Timeline for Species Archaeon Pyrococcus abyssi [TaxId:29292] from b.38.1.1 Archaeal homoheptameric Sm protein: