SCOPe 2.07: Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

Root: SCOPe 2.07
Class a: All alpha proteins [46456] (289 folds)
Fold a.60: SAM domain-like [47768] (16 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.12: PsbU/PolX domain-like [81585] (3 families)
contains one classic and one pseudo HhH motifs
Family a.60.12.1: DNA polymerase beta-like, second domain [81584] (3 proteins)
topological similarity to the N-terminal domain
automatically mapped to Pfam PF10391
Protein DNA polymerase beta [81579] (2 species)
Species Norway rat (Rattus norvegicus) [TaxId:10116] [81577] (23 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

Domain(s) for 1bpb:
- Domain d1bpba1: 1bpb A:91-148 [75811]
  Other proteins in same PDB: d1bpba2
Domain(s) for 1bpd:
- Domain d1bpda2: 1bpd A:92-148 [75813]
  Other proteins in same PDB: d1bpda1, d1bpda3
  complexed with po4
Domain(s) for 1bpe:
- Domain d1bpea2: 1bpe A:92-148 [75815]
  Other proteins in same PDB: d1bpea1, d1bpea3
  complexed with dtp
Domain(s) for 1huo:
1. Domain d1huoa3: 1huo A:92-148 [75846]
  Other proteins in same PDB: d1huoa1, d1huoa4, d1huob1, d1huob4
  protein/DNA complex; complexed with cr, tte
2. Domain d1huob3: 1huo B:92-148 [75848]
  Other proteins in same PDB: d1huoa1, d1huoa4, d1huob1, d1huob4
  protein/DNA complex; complexed with cr, tte
Domain(s) for 1huz:
1. Domain d1huza3: 1huz A:92-148 [75850]
  Other proteins in same PDB: d1huza1, d1huza4, d1huzb1, d1huzb4
  protein/DNA complex; complexed with cr, mdn
2. Domain d1huzb3: 1huz B:92-148 [75852]
  Other proteins in same PDB: d1huza1, d1huza4, d1huzb1, d1huzb4
  protein/DNA complex; complexed with cr, mdn
Domain(s) for 1jn3:
- Domain d1jn3a1: 1jn3 A:91-148 [75864]
  Other proteins in same PDB: d1jn3a2
  mutant
Domain(s) for 1nom:
- Domain d1noma1: 1nom A:91-148 [75929]
  Other proteins in same PDB: d1noma2
  complexed with mn
Domain(s) for 1rpl:
- Domain d1rpla1: 1rpl A:95-148 [75933]
  Other proteins in same PDB: d1rpla2
Domain(s) for 1zqu:
- Domain d1zqua1: 1zqu A:91-148 [75975]
  Other proteins in same PDB: d1zqua2
Domain(s) for 1zqv:
- Domain d1zqva1: 1zqv A:91-148 [75977]
  Other proteins in same PDB: d1zqva2
  complexed with ca
Domain(s) for 1zqw:
- Domain d1zqwa1: 1zqw A:91-148 [75979]
  Other proteins in same PDB: d1zqwa2
Domain(s) for 1zqx:
- Domain d1zqxa1: 1zqx A:91-148 [75981]
  Other proteins in same PDB: d1zqxa2
Domain(s) for 1zqy:
- Domain d1zqya1: 1zqy A:91-148 [75983]
  Other proteins in same PDB: d1zqya2
Domain(s) for 1zqz:
- Domain d1zqza1: 1zqz A:91-148 [75985]
  Other proteins in same PDB: d1zqza2
  complexed with mn
Domain(s) for 2bpc:
- Domain d2bpca1: 2bpc A:91-148 [75989]
  Other proteins in same PDB: d2bpca2
  complexed with mn
Domain(s) for 2bpf:
- Domain d2bpfa3: 2bpf A:92-148 [75991]
  Other proteins in same PDB: d2bpfa1, d2bpfa4
  protein/DNA complex; complexed with dct, mg
Domain(s) for 2bpg:
1. Domain d2bpga3: 2bpg A:92-148 [75993]
  Other proteins in same PDB: d2bpga1, d2bpga4, d2bpgb1, d2bpgb4
  protein/DNA complex; complexed with dct, mg
2. Domain d2bpgb3: 2bpg B:92-148 [75995]
  Other proteins in same PDB: d2bpga1, d2bpga4, d2bpgb1, d2bpgb4
  protein/DNA complex; complexed with dct, mg
Domain(s) for 3k75:
1. Domain d3k75d1: 3k75 D:91-148 [232673]
  Other proteins in same PDB: d3k75b_, d3k75c_, d3k75d2, d3k75d3, d3k75e2
  automated match to d2vana1
2. Domain d3k75e1: 3k75 E:93-148 [232674]
  Other proteins in same PDB: d3k75b_, d3k75c_, d3k75d2, d3k75d3, d3k75e2
  automated match to d2vana1
Domain(s) for 3uxn:
1. Domain d3uxna2: 3uxn A:92-148 [217565]
  Other proteins in same PDB: d3uxna1, d3uxna3, d3uxnb1, d3uxnb3
  automated match to d1huza3
2. Domain d3uxnb2: 3uxn B:92-148 [217568]
  Other proteins in same PDB: d3uxna1, d3uxna3, d3uxnb1, d3uxnb3
  automated match to d1huza3
Domain(s) for 3uxo:
1. Domain d3uxoa2: 3uxo A:92-148 [250278]
  Other proteins in same PDB: d3uxoa1, d3uxoa3, d3uxob1, d3uxob3
  automated match to d4klia2
2. Domain d3uxob2: 3uxo B:92-148 [250281]
  Other proteins in same PDB: d3uxoa1, d3uxoa3, d3uxob1, d3uxob3
  automated match to d4klia2
Domain(s) for 3v7j:
- Domain d3v7ja2: 3v7j A:92-148 [250321]
  Other proteins in same PDB: d3v7ja1, d3v7ja3
  automated match to d4klia2
  protein/DNA complex; complexed with cl, na
Domain(s) for 3v7k:
- Domain d3v7ka2: 3v7k A:92-148 [250324]
  Other proteins in same PDB: d3v7ka1, d3v7ka3
  automated match to d4klia2
  protein/DNA complex; complexed with na
Domain(s) for 3v7l:
- Domain d3v7la2: 3v7l A:92-148 [250327]
  Other proteins in same PDB: d3v7la1, d3v7la3
  automated match to d4klia2
  complexed with cl, na, so4

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta:

Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta first appeared in SCOP 1.63, called Species Rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta
Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta appears in SCOPe 2.06
Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta appears in the current release, SCOPe 2.08