SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Fold f.23: Single transmembrane helix

  1. Root: SCOPe 2.06
  2. 2223823Class f: Membrane and cell surface proteins and peptides [56835] (59 folds)
  3. 2226297Fold f.23: Single transmembrane helix [81407] (42 superfamilies)
    not a true fold

Superfamilies:

  1. 2226298f.23.1: Mitochondrial cytochrome c oxidase subunit IV [81406] (1 family) (S)
    automatically mapped to Pfam PF02936
  2. 2226358f.23.2: Mitochondrial cytochrome c oxidase subunit VIa [81411] (1 family) (S)
    automatically mapped to Pfam PF02046
  3. 2226418f.23.3: Mitochondrial cytochrome c oxidase subunit VIc [81415] (1 family) (S)
    automatically mapped to Pfam PF02937
  4. 2226476f.23.4: Mitochondrial cytochrome c oxidase subunit VIIa [81419] (1 family) (S)
    automatically mapped to Pfam PF02238
  5. 2226536f.23.5: Mitochondrial cytochrome c oxidase subunit VIIb [81423] (1 family) (S)
    automatically mapped to Pfam PF05392
  6. 2226596f.23.6: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) [81427] (1 family) (S)
    automatically mapped to Pfam PF02935
  7. 2226656f.23.7: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) [81431] (1 family) (S)
    automatically mapped to Pfam PF02285
  8. 2226716f.23.8: Bacterial aa3 type cytochrome c oxidase subunit IV [81469] (1 family) (S)
    automatically mapped to Pfam PF07835
  9. 2226726f.23.9: Bacterial ba3 type cytochrome c oxidase subunit IIa [81473] (1 family) (S)
    automatically mapped to Pfam PF08113
  10. 2226754f.23.10: Photosystem II reaction centre subunit H, transmembrane region [81490] (2 families) (S)
  11. 2226888f.23.11: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor [81496] (2 families) (S)
  12. 2226950f.23.12: ISP transmembrane anchor [81502] (2 families) (S)
  13. 2227029f.23.13: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [81508] (1 family) (S)
    automatically mapped to Pfam PF02939
  14. 2227089f.23.14: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [81514] (1 family) (S)
    automatically mapped to Pfam PF05365
  15. 2227151f.23.15: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) [81518] (1 family) (S)
    automatically mapped to Pfam PF08997
  16. 2227173f.23.16: Subunit III of photosystem I reaction centre, PsaF [81536] (2 families) (S)
    automatically mapped to Pfam PF02507
  17. 2227188f.23.17: Subunit VIII of photosystem I reaction centre, PsaI [81540] (1 family) (S)
  18. 2227193f.23.18: Subunit IX of photosystem I reaction centre, PsaJ [81544] (2 families) (S)
    automatically mapped to Pfam PF01701
  19. 2227208f.23.19: Subunit XII of photosystem I reaction centre, PsaM [81548] (1 family) (S)
    automatically mapped to Pfam PF07465
  20. 2227213f.23.20: Subunit PsaX of photosystem I reaction centre [81552] (1 family) (S)
    automatically mapped to Pfam PF08078
  21. 2227218f.23.21: F1F0 ATP synthase subunit B, membrane domain [81573] (1 family) (S)
    automatically mapped to Pfam PF00430
  22. 2227223f.23.22: Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor [81597] (1 family) (S)
    automatically mapped to Pfam PF09163
  23. 2227229f.23.23: Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor [103431] (1 family) (S)
  24. 2227238f.23.24: PetL subunit of the cytochrome b6f complex [103436] (1 family) (S)
  25. 2227253f.23.25: PetM subunit of the cytochrome b6f complex [103441] (1 family) (S)
  26. 2227275f.23.26: PetG subunit of the cytochrome b6f complex [103446] (1 family) (S)
  27. 2227294f.23.27: PetN subunit of the cytochrome b6f complex [103451] (1 family) (S)
    automatically mapped to Pfam PF03742
  28. 2227317f.23.28: Preprotein translocase SecE subunit [103456] (1 family) (S)
  29. 2227330f.23.30: Oligosaccharyltransferase subunit ost4p [103464] (1 family) (S)
    automatically mapped to Pfam PF10215
  30. 2227335f.23.31: Photosystem II reaction center protein L, PsbL [161017] (1 family) (S)
    automatically mapped to Pfam PF02419
  31. 2227352f.23.32: Photosystem II reaction center protein J, PsbJ [161021] (1 family) (S)
    automatically mapped to Pfam PF01788
  32. 2227370f.23.33: Photosystem II 10 kDa phosphoprotein PsbH [161025] (1 family) (S)
    automatically mapped to Pfam PF00737
  33. 2227388f.23.34: Photosystem II reaction center protein T, PsbT [161029] (1 family) (S)
    automatically mapped to Pfam PF01405
  34. 2227401f.23.35: Photosystem II reaction center protein M, PsbM [161033] (1 family) (S)
    automatically mapped to Pfam PF05151
  35. 2227418f.23.36: Photosystem II reaction center protein K, PsbK [161037] (2 families) (S)
    automatically mapped to Pfam PF02533
  36. 2227432f.23.37: Photosystem II reaction center protein I, PsbI [161041] (1 family) (S)
    automatically mapped to Pfam PF02532
  37. 2227446f.23.38: Cytochrome b559 subunits [161045] (1 family) (S)
  38. f.23.39: Photosystem II reaction center protein Y, PsbY [267598] (1 family) (S)
  39. 2227482f.23.40: Photosystem II reaction center protein X, PsbX [267599] (1 family) (S)
    Pfam PF06596
  40. 2227498f.23.41: Photosystem II reaction center protein ycf12 [267600] (1 family) (S)
  41. 2227503f.23.42: Sodium/potassium-transporting ATPase, beta subunit transmembrane helix [310574] (2 families) (S)
  42. 2227528f.23.43: ATP1G1/PLM/MAT8-like (FXYD-like) [310576] (1 family) (S)
    Pfam PF02038

More info for Fold f.23: Single transmembrane helix

Timeline for Fold f.23: Single transmembrane helix: