SCOPe 2.08: Protein: Nitrogenase iron-molybdenum protein, alpha chain

Lineage for Protein: Nitrogenase iron-molybdenum protein, alpha chain

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.92: Chelatase-like [53799] (3 superfamilies)
duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
Superfamily c.92.2: 'Helical backbone' metal receptor [53807] (5 families)
contains a long alpha helical insertion in the interdomain linker

Family c.92.2.3: Nitrogenase iron-molybdenum protein [53816] (3 proteins)
contains three domains of this fold; "Helical backbone" holds domains 2 and 3
both chains are homologous; the inter-chain arrangement of domains 1 is similar to the intra-chain arrangement of domains 2 and 3
automatically mapped to Pfam PF00148

Protein Nitrogenase iron-molybdenum protein, alpha chain [81402] (3 species)

Species:

Azotobacter vinelandii [TaxId:354] [81398] (29 PDB entries)

Domains for 1fp4:
1. Domain d1fp4a_: 1fp4 A: [76187]
  Other proteins in same PDB: d1fp4b_, d1fp4d_
  complexed with ca, cfm, clp, hca; mutant
2. Domain d1fp4c_: 1fp4 C: [76189]
  Other proteins in same PDB: d1fp4b_, d1fp4d_
  complexed with ca, cfm, clp, hca; mutant
Domains for 1g20:
1. Domain d1g20a_: 1g20 A: [35613]
  Other proteins in same PDB: d1g20b_, d1g20d_, d1g20e_, d1g20f_, d1g20g_, d1g20h_
  complexed with ca, cfm, clf, hca, sf4
2. Domain d1g20c_: 1g20 C: [35615]
  Other proteins in same PDB: d1g20b_, d1g20d_, d1g20e_, d1g20f_, d1g20g_, d1g20h_
  complexed with ca, cfm, clf, hca, sf4
Domains for 1g21:
1. Domain d1g21a_: 1g21 A: [35621]
  Other proteins in same PDB: d1g21b_, d1g21d_, d1g21e_, d1g21f_, d1g21g_, d1g21h_
  complexed with atp, ca, cfm, clf, hca, mg, sf4
2. Domain d1g21c_: 1g21 C: [35623]
  Other proteins in same PDB: d1g21b_, d1g21d_, d1g21e_, d1g21f_, d1g21g_, d1g21h_
  complexed with atp, ca, cfm, clf, hca, mg, sf4
Domain for 1l5h:
- Domain d1l5ha_: 1l5h A: [73590]
  Other proteins in same PDB: d1l5hb_
  FeMo-cofactor deficient
  complexed with ca, clf
Domains for 1m1n:
1. Domain d1m1na_: 1m1n A: [78417]
  Other proteins in same PDB: d1m1nb_, d1m1nd_, d1m1nf_, d1m1nh_
  complexed with ca, cfn, clf, hca
2. Domain d1m1nc_: 1m1n C: [78419]
  Other proteins in same PDB: d1m1nb_, d1m1nd_, d1m1nf_, d1m1nh_
  complexed with ca, cfn, clf, hca
3. Domain d1m1ne_: 1m1n E: [78421]
  Other proteins in same PDB: d1m1nb_, d1m1nd_, d1m1nf_, d1m1nh_
  complexed with ca, cfn, clf, hca
4. Domain d1m1ng_: 1m1n G: [78423]
  Other proteins in same PDB: d1m1nb_, d1m1nd_, d1m1nf_, d1m1nh_
  complexed with ca, cfn, clf, hca

Domains for 1m1y:

Domain d1m1ya_: 1m1y A: [78441]
Other proteins in same PDB: d1m1yb_, d1m1yd_, d1m1ye_, d1m1yf_, d1m1yg_, d1m1yh_, d1m1yj_, d1m1yl_, d1m1ym_, d1m1yn_, d1m1yo_, d1m1yp_
chemically crosslinked structure
complexed with ca, cfm, clf, hca, sf4

Domain d1m1yc_: 1m1y C: [78443]
Other proteins in same PDB: d1m1yb_, d1m1yd_, d1m1ye_, d1m1yf_, d1m1yg_, d1m1yh_, d1m1yj_, d1m1yl_, d1m1ym_, d1m1yn_, d1m1yo_, d1m1yp_
chemically crosslinked structure
complexed with ca, cfm, clf, hca, sf4

Domain d1m1yi_: 1m1y I: [78449]
Other proteins in same PDB: d1m1yb_, d1m1yd_, d1m1ye_, d1m1yf_, d1m1yg_, d1m1yh_, d1m1yj_, d1m1yl_, d1m1ym_, d1m1yn_, d1m1yo_, d1m1yp_
chemically crosslinked structure
complexed with ca, cfm, clf, hca, sf4

Domain d1m1yk_: 1m1y K: [78451]
Other proteins in same PDB: d1m1yb_, d1m1yd_, d1m1ye_, d1m1yf_, d1m1yg_, d1m1yh_, d1m1yj_, d1m1yl_, d1m1ym_, d1m1yn_, d1m1yo_, d1m1yp_
chemically crosslinked structure
complexed with ca, cfm, clf, hca, sf4

Domains for 1m34:

Domain d1m34a_: 1m34 A: [78515]
Other proteins in same PDB: d1m34b_, d1m34d_, d1m34e_, d1m34f_, d1m34g_, d1m34h_, d1m34j_, d1m34l_, d1m34m_, d1m34n_, d1m34o_, d1m34p_
complexed with adp, alf, ca, cfm, clf, hca, mg, sf4

Domain d1m34c_: 1m34 C: [78517]
Other proteins in same PDB: d1m34b_, d1m34d_, d1m34e_, d1m34f_, d1m34g_, d1m34h_, d1m34j_, d1m34l_, d1m34m_, d1m34n_, d1m34o_, d1m34p_
complexed with adp, alf, ca, cfm, clf, hca, mg, sf4

Domain d1m34i_: 1m34 I: [78523]
Other proteins in same PDB: d1m34b_, d1m34d_, d1m34e_, d1m34f_, d1m34g_, d1m34h_, d1m34j_, d1m34l_, d1m34m_, d1m34n_, d1m34o_, d1m34p_
complexed with adp, alf, ca, cfm, clf, hca, mg, sf4

Domain d1m34k_: 1m34 K: [78525]
Other proteins in same PDB: d1m34b_, d1m34d_, d1m34e_, d1m34f_, d1m34g_, d1m34h_, d1m34j_, d1m34l_, d1m34m_, d1m34n_, d1m34o_, d1m34p_
complexed with adp, alf, ca, cfm, clf, hca, mg, sf4

Domains for 1n2c:
1. Domain d1n2ca_: 1n2c A: [35617]
  Other proteins in same PDB: d1n2cb_, d1n2cd_, d1n2ce_, d1n2cf_, d1n2cg_, d1n2ch_
  complexed with adp, alf, ca, cfm, clf, hca, mg, sf4
2. Domain d1n2cc_: 1n2c C: [35619]
  Other proteins in same PDB: d1n2cb_, d1n2cd_, d1n2ce_, d1n2cf_, d1n2cg_, d1n2ch_
  complexed with adp, alf, ca, cfm, clf, hca, mg, sf4
Domains for 2min:
1. Domain d2mina_: 2min A: [35609]
  Other proteins in same PDB: d2minb_, d2mind_
  complexed with ca, cfm, clf, hca
2. Domain d2minc_: 2min C: [35611]
  Other proteins in same PDB: d2minb_, d2mind_
  complexed with ca, cfm, clf, hca
Domains for 3min:
1. Domain d3mina_: 3min A: [35605]
  Other proteins in same PDB: d3minb_, d3mind_
  complexed with ca, cfm, clf, hca
2. Domain d3minc_: 3min C: [35607]
  Other proteins in same PDB: d3minb_, d3mind_
  complexed with ca, cfm, clf, hca
Domains for 4wna:
1. Domain d4wnaa_: 4wna A: [270767]
  Other proteins in same PDB: d4wnab_, d4wnad_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics, xe
2. Domain d4wnac_: 4wna C: [270781]
  Other proteins in same PDB: d4wnab_, d4wnad_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics, xe
Domains for 4xpi:
1. Domain d4xpia_: 4xpi A: [278203]
  Other proteins in same PDB: d4xpib_, d4xpid_
  automated match to d1m34a_
  complexed with 1cl, ca, gol, hca, ics, trs
2. Domain d4xpic_: 4xpi C: [278204]
  Other proteins in same PDB: d4xpib_, d4xpid_
  automated match to d1m34a_
  complexed with 1cl, ca, gol, hca, ics, trs
Domains for 5vq4:
1. Domain d5vq4a_: 5vq4 A: [337094]
  Other proteins in same PDB: d5vq4b_, d5vq4d_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics
2. Domain d5vq4c_: 5vq4 C: [337144]
  Other proteins in same PDB: d5vq4b_, d5vq4d_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics
Domains for 6cdk:
1. Domain d6cdka_: 6cdk A: [351989]
  Other proteins in same PDB: d6cdkb_, d6cdkd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics
2. Domain d6cdkc_: 6cdk C: [351821]
  Other proteins in same PDB: d6cdkb_, d6cdkd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics
Domains for 6o7l:
1. Domain d6o7la_: 6o7l A: [371061]
  Other proteins in same PDB: d6o7lb_, d6o7ld_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
2. Domain d6o7lc_: 6o7l C: [371020]
  Other proteins in same PDB: d6o7lb_, d6o7ld_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
Domains for 6o7m:
1. Domain d6o7ma_: 6o7m A: [371068]
  Other proteins in same PDB: d6o7mb_, d6o7md_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
2. Domain d6o7mc_: 6o7m C: [371013]
  Other proteins in same PDB: d6o7mb_, d6o7md_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
Domains for 6o7n:
1. Domain d6o7na_: 6o7n A: [371104]
  Other proteins in same PDB: d6o7nb_, d6o7nd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
2. Domain d6o7nc_: 6o7n C: [371004]
  Other proteins in same PDB: d6o7nb_, d6o7nd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
Domains for 6o7o:
1. Domain d6o7oa_: 6o7o A: [371062]
  Other proteins in same PDB: d6o7ob_, d6o7od_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
2. Domain d6o7oc_: 6o7o C: [371096]
  Other proteins in same PDB: d6o7ob_, d6o7od_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
Domains for 6o7p:
1. Domain d6o7pa_: 6o7p A: [371151]
  Other proteins in same PDB: d6o7pb_, d6o7pd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
2. Domain d6o7pc_: 6o7p C: [371071]
  Other proteins in same PDB: d6o7pb_, d6o7pd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
Domains for 6o7q:
1. Domain d6o7qa_: 6o7q A: [370981]
  Other proteins in same PDB: d6o7qb_, d6o7qd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
2. Domain d6o7qc_: 6o7q C: [371067]
  Other proteins in same PDB: d6o7qb_, d6o7qd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
Domains for 6o7r:
1. Domain d6o7ra_: 6o7r A: [371152]
  Other proteins in same PDB: d6o7rb_, d6o7rd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
2. Domain d6o7rc_: 6o7r C: [371053]
  Other proteins in same PDB: d6o7rb_, d6o7rd_
  automated match to d1g20a_
  complexed with clf, fe, hca, ics; mutant
Domains for 6o7s:
1. Domain d6o7sa_: 6o7s A: [371057]
  Other proteins in same PDB: d6o7sb_, d6o7sd_
  automated match to d1g20a_
  complexed with fe, hca, ics, lpj, na; mutant
2. Domain d6o7sc_: 6o7s C: [371088]
  Other proteins in same PDB: d6o7sb_, d6o7sd_
  automated match to d1g20a_
  complexed with fe, hca, ics, lpj, na; mutant
Domains for 6op1:
1. Domain d6op1a_: 6op1 A: [373001]
  Other proteins in same PDB: d6op1b_, d6op1d_
  automated match to d4xpia_
  complexed with ca, clf, cmo, hca, ics, imd, mg
2. Domain d6op1c_: 6op1 C: [373069]
  Other proteins in same PDB: d6op1b_, d6op1d_
  automated match to d4xpia_
  complexed with ca, clf, cmo, hca, ics, imd, mg
Domains for 6op2:
1. Domain d6op2a_: 6op2 A: [373075]
  Other proteins in same PDB: d6op2b_, d6op2d_
  automated match to d4xpia_
  complexed with ca, clf, hca, ics, imd, mg, se
2. Domain d6op2c_: 6op2 C: [372998]
  Other proteins in same PDB: d6op2b_, d6op2d_
  automated match to d4xpia_
  complexed with ca, clf, hca, ics, imd, mg, se
Domains for 6op3:
1. Domain d6op3a_: 6op3 A: [373061]
  Other proteins in same PDB: d6op3b_, d6op3d_
  automated match to d4xpia_
  complexed with ca, clf, hca, ics, imd, mg, se
2. Domain d6op3c_: 6op3 C: [373050]
  Other proteins in same PDB: d6op3b_, d6op3d_
  automated match to d4xpia_
  complexed with ca, clf, hca, ics, imd, mg, se
Domains for 6op4:
1. Domain d6op4a_: 6op4 A: [373076]
  Other proteins in same PDB: d6op4b_, d6op4d_
  automated match to d4xpia_
  complexed with ca, clf, hca, ics, imd, mg
2. Domain d6op4c_: 6op4 C: [372997]
  Other proteins in same PDB: d6op4b_, d6op4d_
  automated match to d4xpia_
  complexed with ca, clf, hca, ics, imd, mg
Domains for 6ug0:
1. Domain d6ug0a_: 6ug0 A: [388275]
  Other proteins in same PDB: d6ug0b_, d6ug0d_
  automated match to d1g20a_
  complexed with 1cl, fe, gol, h2s, hca, hdz, ice, icz, mo, pge
2. Domain d6ug0c_: 6ug0 C: [388246]
  Other proteins in same PDB: d6ug0b_, d6ug0d_
  automated match to d1g20a_
  complexed with 1cl, fe, gol, h2s, hca, hdz, ice, icz, mo, pge
Domains for 6vxt:
1. Domain d6vxta_: 6vxt A: [388321]
  Other proteins in same PDB: d6vxtb_, d6vxtd_
  automated match to d1g20a_
  complexed with clf, fe, gol, h2s, hca, ics, mo
2. Domain d6vxtc_: 6vxt C: [388299]
  Other proteins in same PDB: d6vxtb_, d6vxtd_
  automated match to d1g20a_
  complexed with clf, fe, gol, h2s, hca, ics, mo
Domains for 7jrf:
1. Domain d7jrfa_: 7jrf A: [402067]
  Other proteins in same PDB: d7jrfb_, d7jrfd_
  automated match to d1g20a_
  complexed with ca, clf, cmo, h2s, hca, ice, imd, mg
2. Domain d7jrfc_: 7jrf C: [402087]
  Other proteins in same PDB: d7jrfb_, d7jrfd_
  automated match to d1g20a_
  complexed with ca, clf, cmo, h2s, hca, ice, imd, mg

Clostridium pasteurianum [TaxId:1501] [81396] (4 PDB entries)
1. Domains for 1mio:
  1. Domain d1mioa_: 1mio A: [35601]
    Other proteins in same PDB: d1miob_, d1miod_
    complexed with ca, cfm, clp, hca
  2. Domain d1mioc_: 1mio C: [35603]
    Other proteins in same PDB: d1miob_, d1miod_
    complexed with ca, cfm, clp, hca
2. Domains for 4wn9:
  1. Domain d4wn9a_: 4wn9 A: [270776]
    Other proteins in same PDB: d4wn9b_, d4wn9d_
    automated match to d1mioa_
    complexed with clf, fe, hca, ics, pro, xe
  2. Domain d4wn9c_: 4wn9 C: [270778]
    Other proteins in same PDB: d4wn9b_, d4wn9d_
    automated match to d1mioa_
    complexed with clf, fe, hca, ics, pro, xe
3. Domains for 5vpw:
  1. Domain d5vpwa_: 5vpw A: [337093]
    Other proteins in same PDB: d5vpwb_, d5vpwd_
    automated match to d1mioa_
    complexed with clf, fe2, hca, ics
  2. Domain d5vpwc_: 5vpw C: [337099]
    Other proteins in same PDB: d5vpwb_, d5vpwd_
    automated match to d1mioa_
    complexed with clf, fe2, hca, ics
4. Domains for 5vq3:
  1. Domain d5vq3a_: 5vq3 A: [337102]
    Other proteins in same PDB: d5vq3b_, d5vq3d_
    automated match to d1mioa_
    complexed with clf, fe2, hca, ics
  2. Domain d5vq3c_: 5vq3 C: [337095]
    Other proteins in same PDB: d5vq3b_, d5vq3d_
    automated match to d1mioa_
    complexed with clf, fe2, hca, ics
Klebsiella pneumoniae [TaxId:573] [81400] (4 PDB entries)
1. Domains for 1h1l:
  1. Domain d1h1la_: 1h1l A: [70851]
    Other proteins in same PDB: d1h1lb_, d1h1ld_
    complexed with cfm, cit, cl, clf, mg; mutant
  2. Domain d1h1lc_: 1h1l C: [70853]
    Other proteins in same PDB: d1h1lb_, d1h1ld_
    complexed with cfm, cit, cl, clf, mg; mutant
2. Domains for 1qgu:
  1. Domain d1qgua_: 1qgu A: [35625]
    Other proteins in same PDB: d1qgub_, d1qgud_
    complexed with cfm, cl, clf, edo, hca, mg
  2. Domain d1qguc_: 1qgu C: [35627]
    Other proteins in same PDB: d1qgub_, d1qgud_
    complexed with cfm, cl, clf, edo, hca, mg
3. Domains for 1qh1:
  1. Domain d1qh1a_: 1qh1 A: [35629]
    Other proteins in same PDB: d1qh1b_, d1qh1d_
    complexed with cfm, cl, clf, edo, hca, mg
  2. Domain d1qh1c_: 1qh1 C: [35631]
    Other proteins in same PDB: d1qh1b_, d1qh1d_
    complexed with cfm, cl, clf, edo, hca, mg
4. Domains for 1qh8:
  1. Domain d1qh8a_: 1qh8 A: [35633]
    Other proteins in same PDB: d1qh8b_, d1qh8d_
    complexed with cfm, cl, clf, edo, hca, mg
  2. Domain d1qh8c_: 1qh8 C: [35635]
    Other proteins in same PDB: d1qh8b_, d1qh8d_
    complexed with cfm, cl, clf, edo, hca, mg

More info for Protein Nitrogenase iron-molybdenum protein, alpha chain from c.92.2.3: Nitrogenase iron-molybdenum protein

Timeline for Protein Nitrogenase iron-molybdenum protein, alpha chain from c.92.2.3: Nitrogenase iron-molybdenum protein:

Protein Nitrogenase iron-molybdenum protein, alpha chain from c.92.2.3: Nitrogenase iron-molybdenum protein first appeared in SCOP 1.63
Protein Nitrogenase iron-molybdenum protein, alpha chain from c.92.2.3: Nitrogenase iron-molybdenum protein appears in SCOPe 2.07