SCOPe 2.08: Protein: Barnase

Lineage for Protein: Barnase

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.1: Microbial ribonucleases [53932] (1 superfamily)
single helix packs against antiparallel beta-sheet
Superfamily d.1.1: Microbial ribonucleases [53933] (4 families)
Family d.1.1.2: Bacterial ribonucleases [81307] (6 proteins)
Protein Barnase [81305] (1 species)

Species:

Bacillus amyloliquefaciens [TaxId:1390] [53945] (49 PDB entries)
1. Domains for 1a2p:
  1. Domain d1a2pa_: 1a2p A: [36140]
    complexed with zn
  2. Domain d1a2pb_: 1a2p B: [36141]
    complexed with zn
  3. Domain d1a2pc_: 1a2p C: [36142]
    complexed with zn
2. Domains for 1b20:
  1. Domain d1b20a_: 1b20 A: [36207]
    complexed with zn
  2. Domain d1b20b_: 1b20 B: [36208]
    complexed with zn
  3. Domain d1b20c_: 1b20 C: [36209]
    complexed with zn
3. Domains for 1b21:
  1. Domain d1b21a_: 1b21 A: [36219]
    complexed with zn
  2. Domain d1b21b_: 1b21 B: [36220]
    complexed with zn
  3. Domain d1b21c_: 1b21 C: [36221]
    complexed with zn
4. Domains for 1b27:
  1. Domain d1b27a_: 1b27 A: [36223]
    Other proteins in same PDB: d1b27d_, d1b27e_, d1b27f_
    protein/RNA complex; mutant
  2. Domain d1b27b_: 1b27 B: [36224]
    Other proteins in same PDB: d1b27d_, d1b27e_, d1b27f_
    protein/RNA complex; mutant
  3. Domain d1b27c_: 1b27 C: [36225]
    Other proteins in same PDB: d1b27d_, d1b27e_, d1b27f_
    protein/RNA complex; mutant
5. Domains for 1b2s:
  1. Domain d1b2sa_: 1b2s A: [36213]
    Other proteins in same PDB: d1b2sd_, d1b2se_, d1b2sf_
    protein/RNA complex; complexed with so4; mutant
  2. Domain d1b2sb_: 1b2s B: [36214]
    Other proteins in same PDB: d1b2sd_, d1b2se_, d1b2sf_
    protein/RNA complex; complexed with so4; mutant
  3. Domain d1b2sc_: 1b2s C: [36215]
    Other proteins in same PDB: d1b2sd_, d1b2se_, d1b2sf_
    protein/RNA complex; complexed with so4; mutant
6. Domains for 1b2u:
  1. Domain d1b2ua_: 1b2u A: [36226]
    Other proteins in same PDB: d1b2ud_, d1b2ue_, d1b2uf_
    protein/RNA complex; mutant
  2. Domain d1b2ub_: 1b2u B: [36227]
    Other proteins in same PDB: d1b2ud_, d1b2ue_, d1b2uf_
    protein/RNA complex; mutant
  3. Domain d1b2uc_: 1b2u C: [36228]
    Other proteins in same PDB: d1b2ud_, d1b2ue_, d1b2uf_
    protein/RNA complex; mutant
7. Domains for 1b2x:
  1. Domain d1b2xa_: 1b2x A: [36210]
    complexed with zn
  2. Domain d1b2xb_: 1b2x B: [36211]
    complexed with zn
  3. Domain d1b2xc_: 1b2x C: [36212]
    complexed with zn
8. Domains for 1b2z:
  1. Domain d1b2za_: 1b2z A: [36216]
    complexed with zn
  2. Domain d1b2zb_: 1b2z B: [36217]
    complexed with zn
  3. Domain d1b2zc_: 1b2z C: [36218]
    complexed with zn
9. Domains for 1b3s:
  1. Domain d1b3sa_: 1b3s A: [36229]
    Other proteins in same PDB: d1b3sd_, d1b3se_, d1b3sf_
    protein/RNA complex; mutant
  2. Domain d1b3sb_: 1b3s B: [36230]
    Other proteins in same PDB: d1b3sd_, d1b3se_, d1b3sf_
    protein/RNA complex; mutant
  3. Domain d1b3sc_: 1b3s C: [36231]
    Other proteins in same PDB: d1b3sd_, d1b3se_, d1b3sf_
    protein/RNA complex; mutant
10. Domains for 1ban:
  1. Domain d1bana_: 1ban A: [36197]
    mutant
  2. Domain d1banb_: 1ban B: [36198]
    mutant
  3. Domain d1banc_: 1ban C: [36199]
    mutant
11. Domains for 1bao:
  1. Domain d1baoa_: 1bao A: [36187]
    complexed with zn; mutant
  2. Domain d1baob_: 1bao B: [36188]
    complexed with zn; mutant
  3. Domain d1baoc_: 1bao C: [36189]
    complexed with zn; mutant
12. Domains for 1bgs:
  1. Domain d1bgsa_: 1bgs A: [36203]
    Other proteins in same PDB: d1bgse_, d1bgsf_, d1bgsg_
  2. Domain d1bgsb_: 1bgs B: [36204]
    Other proteins in same PDB: d1bgse_, d1bgsf_, d1bgsg_
  3. Domain d1bgsc_: 1bgs C: [36205]
    Other proteins in same PDB: d1bgse_, d1bgsf_, d1bgsg_
13. Domains for 1bne:
  1. Domain d1bnea_: 1bne A: [36181]
    mutant
  2. Domain d1bneb_: 1bne B: [36182]
    mutant
  3. Domain d1bnec_: 1bne C: [36183]
    mutant
14. Domains for 1bnf:
  1. Domain d1bnfa_: 1bnf A: [36166]
    mutant
  2. Domain d1bnfb_: 1bnf B: [36167]
    mutant
  3. Domain d1bnfc_: 1bnf C: [36168]
    mutant
15. Domains for 1bng:
  1. Domain d1bnga_: 1bng A: [36184]
    mutant
  2. Domain d1bngb_: 1bng B: [36185]
    mutant
  3. Domain d1bngc_: 1bng C: [36186]
    mutant
16. Domains for 1bni:
  1. Domain d1bnia_: 1bni A: [36193]
  2. Domain d1bnib_: 1bni B: [36194]
  3. Domain d1bnic_: 1bni C: [36195]
17. Domains for 1bnj:
  1. Domain d1bnja_: 1bnj A: [36172]
  2. Domain d1bnjb_: 1bnj B: [36173]
  3. Domain d1bnjc_: 1bnj C: [36174]
18. Domain for 1bnr:
  - Domain d1bnra_: 1bnr A: [36206]
19. Domains for 1bns:
  1. Domain d1bnsa_: 1bns A: [36178]
    mutant
  2. Domain d1bnsb_: 1bns B: [36179]
    mutant
  3. Domain d1bnsc_: 1bns C: [36180]
    mutant
20. Domains for 1brg:
  1. Domain d1brga_: 1brg A: [36190]
    complexed with zn
  2. Domain d1brgb_: 1brg B: [36191]
    complexed with zn
  3. Domain d1brgc_: 1brg C: [36192]
    complexed with zn
21. Domains for 1brh:
  1. Domain d1brha_: 1brh A: [36151]
    complexed with zn; mutant
  2. Domain d1brhb_: 1brh B: [36152]
    complexed with zn; mutant
  3. Domain d1brhc_: 1brh C: [36153]
    complexed with zn; mutant
22. Domains for 1bri:
  1. Domain d1bria_: 1bri A: [36145]
    mutant
  2. Domain d1brib_: 1bri B: [36146]
    mutant
  3. Domain d1bric_: 1bri C: [36147]
    mutant
23. Domains for 1brj:
  1. Domain d1brja_: 1brj A: [36160]
    complexed with zn; mutant
  2. Domain d1brjb_: 1brj B: [36161]
    complexed with zn; mutant
  3. Domain d1brjc_: 1brj C: [36162]
    complexed with zn; mutant
24. Domains for 1brk:
  1. Domain d1brka_: 1brk A: [36148]
    complexed with zn; mutant
  2. Domain d1brkb_: 1brk B: [36149]
    complexed with zn; mutant
  3. Domain d1brkc_: 1brk C: [36150]
    complexed with zn; mutant
25. Domains for 1brn:
  1. Domain d1brnl_: 1brn L: [36143]
    protein/DNA complex; protein/RNA complex
  2. Domain d1brnm_: 1brn M: [36144]
    protein/DNA complex; protein/RNA complex
26. Domains for 1brs:
  1. Domain d1brsa_: 1brs A: [36163]
    Other proteins in same PDB: d1brsd_, d1brse_, d1brsf_
  2. Domain d1brsb_: 1brs B: [36164]
    Other proteins in same PDB: d1brsd_, d1brse_, d1brsf_
  3. Domain d1brsc_: 1brs C: [36165]
    Other proteins in same PDB: d1brsd_, d1brse_, d1brsf_
27. Domains for 1bsa:
  1. Domain d1bsaa_: 1bsa A: [36169]
    mutant
  2. Domain d1bsab_: 1bsa B: [36170]
    mutant
  3. Domain d1bsac_: 1bsa C: [36171]
    mutant
28. Domains for 1bsb:
  1. Domain d1bsba_: 1bsb A: [36157]
    mutant
  2. Domain d1bsbb_: 1bsb B: [36158]
    mutant
  3. Domain d1bsbc_: 1bsb C: [36159]
    mutant
29. Domains for 1bsc:
  1. Domain d1bsca_: 1bsc A: [36154]
    mutant
  2. Domain d1bscb_: 1bsc B: [36155]
    mutant
  3. Domain d1bscc_: 1bsc C: [36156]
    mutant
30. Domains for 1bsd:
  1. Domain d1bsda_: 1bsd A: [36200]
    mutant
  2. Domain d1bsdb_: 1bsd B: [36201]
    mutant
  3. Domain d1bsdc_: 1bsd C: [36202]
    mutant
31. Domains for 1bse:
  1. Domain d1bsea_: 1bse A: [36175]
    mutant
  2. Domain d1bseb_: 1bse B: [36176]
    mutant
  3. Domain d1bsec_: 1bse C: [36177]
    mutant
32. Domain for 1fw7:
  - Domain d1fw7a_: 1fw7 A: [83262]
33. Domain for 1rnb:
  - Domain d1rnba_: 1rnb A: [36196]
    complexed with so4
34. Domains for 1x1u:
  1. Domain d1x1ua_: 1x1u A: [121598]
    Other proteins in same PDB: d1x1ud_, d1x1ue_, d1x1uf_
    automated match to d1b27a_
  2. Domain d1x1ub_: 1x1u B: [121599]
    Other proteins in same PDB: d1x1ud_, d1x1ue_, d1x1uf_
    automated match to d1b27a_
  3. Domain d1x1uc_: 1x1u C: [121600]
    Other proteins in same PDB: d1x1ud_, d1x1ue_, d1x1uf_
    automated match to d1b27a_
35. Domains for 1x1w:
  1. Domain d1x1wa_: 1x1w A: [121604]
    Other proteins in same PDB: d1x1wd1, d1x1we_, d1x1wf_
    automated match to d1b27a_
  2. Domain d1x1wb_: 1x1w B: [121605]
    Other proteins in same PDB: d1x1wd1, d1x1we_, d1x1wf_
    automated match to d1b27a_
  3. Domain d1x1wc_: 1x1w C: [121606]
    Other proteins in same PDB: d1x1wd1, d1x1we_, d1x1wf_
    automated match to d1b27a_
36. Domains for 1x1x:
  1. Domain d1x1xa_: 1x1x A: [121607]
    Other proteins in same PDB: d1x1xd1, d1x1xe_, d1x1xf_
    automated match to d1b27a_
  2. Domain d1x1xb_: 1x1x B: [121608]
    Other proteins in same PDB: d1x1xd1, d1x1xe_, d1x1xf_
    automated match to d1b27a_
  3. Domain d1x1xc_: 1x1x C: [121609]
    Other proteins in same PDB: d1x1xd1, d1x1xe_, d1x1xf_
    automated match to d1b27a_
37. Domains for 1x1y:
  1. Domain d1x1ya_: 1x1y A: [121610]
    Other proteins in same PDB: d1x1yd1, d1x1ye_, d1x1yf_
    automated match to d1b27a_
  2. Domain d1x1yb_: 1x1y B: [121611]
    Other proteins in same PDB: d1x1yd1, d1x1ye_, d1x1yf_
    automated match to d1b27a_
  3. Domain d1x1yc_: 1x1y C: [121612]
    Other proteins in same PDB: d1x1yd1, d1x1ye_, d1x1yf_
    automated match to d1b27a_
38. Domain for 1yvs:
  - Domain d1yvsa_: 1yvs A: [36222]
    trimeric domain swapped form
    complexed with so4
39. Domains for 2c4b:
  1. Domain d2c4ba1: 2c4b A:3-110 [129801]
    Other proteins in same PDB: d2c4ba2, d2c4bb2
    automatically matched to d1b3sa_
    complexed with 2pe, edo, fmt, gol, mes, so4, unx; mutant
  2. Domain d2c4bb1: 2c4b B:3-110 [129803]
    Other proteins in same PDB: d2c4ba2, d2c4bb2
    automatically matched to d1b3sa_
    complexed with 2pe, edo, fmt, gol, mes, so4, unx; mutant
40. Domains for 2f4y:
  1. Domain d2f4ya_: 2f4y A: [132960]
    automated match to d1b27a_
    complexed with zn
  2. Domain d2f4yb_: 2f4y B: [132961]
    automated match to d1b27a_
    complexed with zn
  3. Domain d2f4yc_: 2f4y C: [132962]
    automated match to d1b27a_
    complexed with zn
41. Domains for 2f56:
  1. Domain d2f56a_: 2f56 A: [132974]
    automated match to d1b27a_
    complexed with ure, zn
  2. Domain d2f56b_: 2f56 B: [132975]
    automated match to d1b27a_
    complexed with ure, zn
  3. Domain d2f56c_: 2f56 C: [132976]
    automated match to d1b27a_
    complexed with ure, zn
42. Domains for 2f5m:
  1. Domain d2f5ma_: 2f5m A: [133001]
    automated match to d1b27a_
    complexed with brj
  2. Domain d2f5mb_: 2f5m B: [133002]
    automated match to d1b27a_
    complexed with brj
  3. Domain d2f5mc_: 2f5m C: [133003]
    automated match to d1b27a_
    complexed with brj
43. Domains for 2f5w:
  1. Domain d2f5wa_: 2f5w A: [133012]
    automated match to d1b27a_
    complexed with tou, zn
  2. Domain d2f5wb_: 2f5w B: [133013]
    automated match to d1b27a_
    complexed with tou, zn
  3. Domain d2f5wc_: 2f5w C: [133014]
    automated match to d1b27a_
    complexed with tou, zn
44. Domain for 2kf3:
  - Domain d2kf3a_: 2kf3 A: [242492]
    automated match to d1b3sa_
45. Domain for 2kf4:
  - Domain d2kf4a_: 2kf4 A: [242493]
    automated match to d1b3sa_
46. Domain for 2kf5:
  - Domain d2kf5a_: 2kf5 A: [242494]
    automated match to d1b3sa_
47. Domain for 2kf6:
  - Domain d2kf6a_: 2kf6 A: [242495]
    automated match to d1b3sa_
48. Domains for 2za4:
  1. Domain d2za4a_: 2za4 A: [171121]
    Other proteins in same PDB: d2za4b_, d2za4d_
    automated match to d1b27a_
    complexed with cl
  2. Domain d2za4c_: 2za4 C: [171123]
    Other proteins in same PDB: d2za4b_, d2za4d_
    automated match to d1b27a_
    complexed with cl
49. Domains for 3kch:
  1. Domain d3kcha_: 3kch A: [179268]
    automated match to d1b27a_
    complexed with ptd
  2. Domain d3kchb_: 3kch B: [179269]
    automated match to d1b27a_
    complexed with ptd
  3. Domain d3kchc_: 3kch C: [179270]
    automated match to d1b27a_
    complexed with ptd

More info for Protein Barnase from d.1.1.2: Bacterial ribonucleases

Timeline for Protein Barnase from d.1.1.2: Bacterial ribonucleases:

Protein Barnase from d.1.1.2: Bacterial ribonucleases first appeared in SCOP 1.63
Protein Barnase from d.1.1.2: Bacterial ribonucleases appears in SCOPe 2.07