Lineage for Family c.37.1.20: Extended AAA-ATPase domain

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1593542Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 1593543Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families) (S)
    division into families based on beta-sheet topologies
  5. 1597497Family c.37.1.20: Extended AAA-ATPase domain [81269] (29 proteins)
    fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain

Proteins:

  1. 1597498AAA domain of cell division protein FtsH [82418] (3 species)
    ATP-dependent protease
    1. 1597499Species Escherichia coli [TaxId:562] [82419] (1 PDB entry)
    2. 1597501Species Thermotoga maritima [TaxId:2336] [142325] (3 PDB entries)
      Uniprot Q9WZ49 150-402
    3. 1597517Species Thermus thermophilus [TaxId:274] [82420] (4 PDB entries)
  2. 1597522Archaeal ATPase SSO1545 [142326] (1 species)
    member of Pfam PF01637 family; overall structural similarity to the archael CDC6-like protein APE0102
  3. 1597526ATPase domain of protease Lon (La) [102393] (2 species)
    1. 1597527Species Brevibacillus thermoruber [TaxId:33942] [227843] (1 PDB entry)
    2. 1597530Species Escherichia coli [TaxId:562] [102394] (1 PDB entry)
  4. 1597532ATPase subunit of magnesium chelatase, BchI [64040] (1 species)
  5. 1597535CDC6, N-domain [52715] (1 species)
    contains "winged helix" DNA-binding domain after the family specific domains
  6. 1597539CDC6-like protein APE0152, N-terminal domain [117556] (1 species)
  7. 1597546CED-4, NB-ARC domain [159577] (1 species)
    belongs to Pfam PF00931
  8. 1597550Chromosomal replication initiation factor DnaA [82416] (1 species)
    contains TrpR-like DNA-binding domain after the family specific domains
  9. 1597557ClpA, an Hsp100 chaperone, AAA+ modules [82421] (1 species)
    duplication: two AAA+ modules; the first module is structurally similar to the CDC6 module whereas the second module to the HslU module
  10. 1597563ClpB, AAA+ modules [75211] (2 species)
    ATPase subunit of ATP-dependent protease; similar domain organization to ClpA
    1. 1597564Species Escherichia coli [TaxId:562] [75212] (1 PDB entry)
    2. 1597566Species Thermus thermophilus [TaxId:274] [102395] (1 PDB entry)
  11. 1597573ClpX [102391] (1 species)
    ATPase subunit of ATP-dependent protease
  12. 1597576delta prime subunit of DNA polymerase III, N-domain [52711] (1 species)
    contains additional alpha-helical domain after the family specific domains
  13. 1597590delta subunit of DNA polymerase III, N-domain [64033] (1 species)
  14. 1597600gamma subunit of DNA polymerase III, N-domain [64031] (2 species)
    1. 1597601Species Escherichia coli [TaxId:562] [64032] (3 PDB entries)
      Uniprot P06710 5-368
    2. 1597617Species Thermotoga maritima [TaxId:2336] [142324] (1 PDB entry)
      Uniprot Q9WZM9 11-208
  15. 1597619Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein [52717] (1 species)
  16. 1597623Holliday junction helicase RuvB [52713] (2 species)
    contains "winged helix" DNA-binding domain after the family specific domains
    1. 1597624Species Thermotoga maritima [TaxId:2336] [64037] (6 PDB entries)
    2. 1597631Species Thermus thermophilus [TaxId:274] [52714] (3 PDB entries)
  17. 1597636HslU [52721] (2 species)
    ATPase subunit of ATP-dependent protease
    1. 1597637Species Escherichia coli [TaxId:562] [52722] (9 PDB entries)
    2. 1597668Species Haemophilus influenzae [TaxId:727] [52723] (6 PDB entries)
  18. 1597701Membrane fusion ATPase VCP/p97 [64038] (1 species)
  19. 1597718Papillomavirus large T antigen helicase domain [89688] (1 species)
  20. 1597745Rep 40 protein helicase domain [110564] (1 species)
  21. 1597751Replication factor C [64035] (1 species)
    contains additional alpha-helical domain after the family specific domains
  22. 1597759Replication factor C1 [110566] (1 species)
  23. 1597762Replication factor C2 [110572] (1 species)
  24. 1597765Replication factor C3 [110570] (1 species)
  25. 1597768Replication factor C4 [110568] (1 species)
  26. 1597771Replication factor C5 [110574] (1 species)
  27. 1597774Replication protein E1 helicase domain [110576] (1 species)
  28. 1597782Transcriptional activator sigm54 (NtrC1), C-terminal domain [102389] (1 species)
  29. 1597800automated matches [190766] (3 species)
    not a true protein
    1. 1597801Species Aquifex aeolicus [TaxId:63363] [226012] (1 PDB entry)
    2. 1597809Species Human (Homo sapiens) [TaxId:9606] [255867] (6 PDB entries)
    3. 1597844Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [187983] (1 PDB entry)

More info for Family c.37.1.20: Extended AAA-ATPase domain

Timeline for Family c.37.1.20: Extended AAA-ATPase domain: