Lineage for Family c.37.1.20: Extended AAA-ATPase domain

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 987024Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 987025Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families) (S)
    division into families based on beta-sheet topologies
  5. 990157Family c.37.1.20: Extended AAA-ATPase domain [81269] (29 proteins)
    fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain

Proteins:

  1. 990158AAA domain of cell division protein FtsH [82418] (3 species)
    ATP-dependent protease
    1. 990159Species Escherichia coli [TaxId:562] [82419] (1 PDB entry)
    2. 990161Species Thermotoga maritima [TaxId:2336] [142325] (2 PDB entries)
      Uniprot Q9WZ49 150-402
    3. 990174Species Thermus thermophilus [TaxId:274] [82420] (4 PDB entries)
  2. 990179Archaeal ATPase SSO1545 [142326] (1 species)
    member of Pfam PF01637 family; overall structural similarity to the archael CDC6-like protein APE0102
  3. 990183ATPase domain of protease Lon (La) [102393] (1 species)
  4. 990186ATPase subunit of magnesium chelatase, BchI [64040] (1 species)
  5. 990189CDC6, N-domain [52715] (1 species)
    contains "winged helix" DNA-binding domain after the family specific domains
  6. 990193CDC6-like protein APE0152, N-terminal domain [117556] (1 species)
  7. 990200CED-4, NB-ARC domain [159577] (1 species)
    belongs to Pfam PF00931
  8. 990203Chromosomal replication initiation factor DnaA [82416] (1 species)
    contains TrpR-like DNA-binding domain after the family specific domains
  9. 990210ClpA, an Hsp100 chaperone, AAA+ modules [82421] (1 species)
    duplication: two AAA+ modules; the first module is structurally similar to the CDC6 module whereas the second module to the HslU module
  10. 990216ClpB, AAA+ modules [75211] (2 species)
    ATPase subunit of ATP-dependent protease; similar domain organization to ClpA
    1. 990217Species Escherichia coli [TaxId:562] [75212] (1 PDB entry)
    2. 990219Species Thermus thermophilus [TaxId:274] [102395] (1 PDB entry)
  11. 990226ClpX [102391] (1 species)
    ATPase subunit of ATP-dependent protease
  12. 990229delta prime subunit of DNA polymerase III, N-domain [52711] (1 species)
    contains additional alpha-helical domain after the family specific domains
  13. 990243delta subunit of DNA polymerase III, N-domain [64033] (1 species)
  14. 990253gamma subunit of DNA polymerase III, N-domain [64031] (2 species)
    1. 990254Species Escherichia coli [TaxId:562] [64032] (3 PDB entries)
      Uniprot P06710 5-368
    2. 990270Species Thermotoga maritima [TaxId:2336] [142324] (1 PDB entry)
      Uniprot Q9WZM9 11-208
  15. 990272Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein [52717] (1 species)
  16. 990276Holliday junction helicase RuvB [52713] (2 species)
    contains "winged helix" DNA-binding domain after the family specific domains
    1. 990277Species Thermotoga maritima [TaxId:2336] [64037] (6 PDB entries)
    2. 990284Species Thermus thermophilus [TaxId:274] [52714] (3 PDB entries)
  17. 990289HslU [52721] (2 species)
    ATPase subunit of ATP-dependent protease
    1. 990290Species Escherichia coli [TaxId:562] [52722] (9 PDB entries)
    2. 990321Species Haemophilus influenzae [TaxId:727] [52723] (6 PDB entries)
  18. 990354Membrane fusion ATPase VCP/p97 [64038] (1 species)
  19. 990371Papillomavirus large T antigen helicase domain [89688] (1 species)
  20. 990398Rep 40 protein helicase domain [110564] (1 species)
  21. 990404Replication factor C [64035] (1 species)
    contains additional alpha-helical domain after the family specific domains
  22. 990412Replication factor C1 [110566] (1 species)
  23. 990415Replication factor C2 [110572] (1 species)
  24. 990418Replication factor C3 [110570] (1 species)
  25. 990421Replication factor C4 [110568] (1 species)
  26. 990424Replication factor C5 [110574] (1 species)
  27. 990427Replication protein E1 helicase domain [110576] (1 species)
  28. 990435Transcriptional activator sigm54 (NtrC1), C-terminal domain [102389] (1 species)
  29. 990453automated matches [190766] (1 species)
    not a true protein

More info for Family c.37.1.20: Extended AAA-ATPase domain

Timeline for Family c.37.1.20: Extended AAA-ATPase domain: