Lineage for Family c.37.1.20: Extended AAA-ATPase domain

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2865683Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2865684Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families) (S)
    division into families based on beta-sheet topologies
  5. 2870969Family c.37.1.20: Extended AAA-ATPase domain [81269] (43 proteins)
    fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain

Proteins:

  1. 2870970AAA domain of cell division protein FtsH [82418] (3 species)
    ATP-dependent protease
    1. 2870971Species Escherichia coli [TaxId:562] [82419] (1 PDB entry)
    2. 2870973Species Thermotoga maritima [TaxId:2336] [142325] (3 PDB entries)
      Uniprot Q9WZ49 150-402
    3. 2870989Species Thermus thermophilus [TaxId:274] [82420] (4 PDB entries)
  2. 2870994Archaeal ATPase SSO1545 [142326] (1 species)
    member of Pfam PF01637 family; overall structural similarity to the archael CDC6-like protein APE0102
  3. 2870998ATPase domain of protease Lon (La) [102393] (2 species)
    1. 2870999Species Brevibacillus thermoruber [TaxId:33942] [227843] (1 PDB entry)
    2. 2871002Species Escherichia coli [TaxId:562] [102394] (1 PDB entry)
  4. 2871004ATPase subunit of magnesium chelatase, BchI [64040] (1 species)
  5. 2871007CDC6, N-domain [52715] (1 species)
    contains "winged helix" DNA-binding domain after the family specific domains
  6. 2871011CDC6-like protein APE0152, N-terminal domain [117556] (1 species)
  7. 2871018CED-4, NB-ARC domain [159577] (1 species)
    belongs to Pfam PF00931
  8. 2871022Chromosomal replication initiation factor DnaA [82416] (1 species)
    contains TrpR-like DNA-binding domain after the family specific domains
  9. 2871029ClpA, an Hsp100 chaperone, AAA+ modules [82421] (1 species)
    duplication: two AAA+ modules; the first module is structurally similar to the CDC6 module whereas the second module to the HslU module
  10. ClpB, AAA+ modules, C-terminal domain [418981] (1 species)
    ATPase subunit of ATP-dependent protease; similar domain organization to ClpA
  11. 2871040ClpB, AAA+ modules, N-terminal domain [418980] (2 species)
    ATPase subunit of ATP-dependent protease; similar domain organization to ClpA
    1. 2871041Species Escherichia coli [TaxId:562] [75212] (1 PDB entry)
    2. 2871043Species Thermus thermophilus [TaxId:274] [419448] (1 PDB entry)
  12. 2871047ClpX [102391] (1 species)
    ATPase subunit of ATP-dependent protease
  13. 2871050delta prime subunit of DNA polymerase III, N-domain [52711] (1 species)
    contains additional alpha-helical domain after the family specific domains
  14. 2871064delta subunit of DNA polymerase III, N-domain [64033] (1 species)
  15. 2871074gamma subunit of DNA polymerase III, N-domain [64031] (2 species)
    1. 2871075Species Escherichia coli [TaxId:562] [64032] (3 PDB entries)
      Uniprot P06710 5-368
    2. 2871091Species Thermotoga maritima [TaxId:2336] [142324] (1 PDB entry)
      Uniprot Q9WZM9 11-208
  16. 2871093Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein [52717] (1 species)
  17. 2871097Holliday junction helicase RuvB [52713] (2 species)
    contains "winged helix" DNA-binding domain after the family specific domains
    1. 2871098Species Thermotoga maritima [TaxId:2336] [64037] (6 PDB entries)
    2. 2871105Species Thermus thermophilus [TaxId:274] [52714] (3 PDB entries)
  18. 2871110HslU [52721] (2 species)
    ATPase subunit of ATP-dependent protease
    1. 2871111Species Escherichia coli [TaxId:562] [52722] (11 PDB entries)
    2. 2871145Species Haemophilus influenzae [TaxId:727] [52723] (6 PDB entries)
  19. 2871178Membrane fusion ATPase VCP/p97 [64038] (2 species)
    1. 2871179Species Human (Homo sapiens) [TaxId:9606] [313486] (5 PDB entries)
    2. 2871218Species Mouse (Mus musculus) [TaxId:10090] [64039] (4 PDB entries)
  20. 2871234Papillomavirus large T antigen helicase domain [89688] (1 species)
  21. 2871261Proteasome regulatory particle base subunit Rpt1, C-terminal domain [346072] (1 species)
  22. 2871264Proteasome regulatory particle base subunit Rpt1, OB-fold domain [346073] (1 species)
  23. 2871267Proteasome regulatory particle base subunit Rpt2, C-terminal domain [346074] (1 species)
  24. 2871270Proteasome regulatory particle base subunit Rpt2, OB-fold domain [346075] (1 species)
  25. 2871273Proteasome regulatory particle base subunit Rpt3, C-terminal domain [346076] (1 species)
  26. 2871276Proteasome regulatory particle base subunit Rpt3, OB-fold domain [346077] (1 species)
  27. 2871279Proteasome regulatory particle base subunit Rpt4, C-terminal domain [346078] (1 species)
  28. 2871282Proteasome regulatory particle base subunit Rpt4, OB-fold domain [346079] (1 species)
  29. 2871285Proteasome regulatory particle base subunit Rpt5, C-terminal domain [346080] (1 species)
  30. 2871288Proteasome regulatory particle base subunit Rpt5, OB-fold domain [346081] (1 species)
  31. 2871291Proteasome regulatory particle base subunit Rpt6, C-terminal domain [346082] (1 species)
  32. 2871294Proteasome regulatory particle base subunit Rpt6, OB-fold domain [346083] (1 species)
  33. 2871297Proteasome-activating nucleotidase PAN, C-terminal domain [346084] (1 species)
  34. 2871302Rep 40 protein helicase domain [110564] (1 species)
  35. 2871308Replication factor C [64035] (1 species)
    contains additional alpha-helical domain after the family specific domains
  36. 2871316Replication factor C1 [110566] (1 species)
  37. 2871319Replication factor C2 [110572] (1 species)
  38. 2871322Replication factor C3 [110570] (1 species)
  39. 2871325Replication factor C4 [110568] (1 species)
  40. 2871328Replication factor C5 [110574] (1 species)
  41. 2871331Replication protein E1 helicase domain [110576] (1 species)
  42. 2871339Transcriptional activator sigm54 (NtrC1), C-terminal domain [102389] (1 species)
  43. 2871357automated matches [190766] (8 species)
    not a true protein
    1. 2871358Species Aquifex aeolicus [TaxId:63363] [226012] (1 PDB entry)
    2. Species Escherichia coli [TaxId:562] [382113] (1 PDB entry)
    3. 2871381Species Escherichia coli [TaxId:83333] [384333] (3 PDB entries)
    4. 2871412Species Human (Homo sapiens) [TaxId:9606] [255867] (6 PDB entries)
    5. 2871447Species Jc polyomavirus [TaxId:10632] [319763] (4 PDB entries)
    6. 2871452Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [187983] (1 PDB entry)
    7. 2871454Species Neisseria meningitidis [TaxId:487] [420066] (1 PDB entry)
    8. 2871461Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [373406] (1 PDB entry)

More info for Family c.37.1.20: Extended AAA-ATPase domain

Timeline for Family c.37.1.20: Extended AAA-ATPase domain: