SCOPe 2.06: Domain d1npda2: 1npd A:1-106

Lineage for d1npda2 (1npd A:1-106)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.58: Aminoacid dehydrogenase-like, N-terminal domain [53222] (1 superfamily)
   core: 3 layers: a/b/a; parallel beta-sheet of 4 strands; 2134

4. Superfamily c.58.1: Aminoacid dehydrogenase-like, N-terminal domain [53223] (6 families)

5. Family c.58.1.5: Shikimate dehydrogenase-like [82336] (3 proteins)

6. Protein Putative shikimate dehydrogenase YdiB [82337] (1 species)

7. Species Escherichia coli [TaxId:562] [82338] (3 PDB entries)

8. Domain d1npda2: 1npd A:1-106 [80682]
   Other proteins in same PDB: d1npda1, d1npdb1
   structural genomics
   complexed with nad

Details for d1npda2

PDB Entry: 1npd, 2.3 Å

PDB Description: x-ray structure of shikimate dehydrogenase complexed with nad+ from e.coli (ydib) northeast structural genomics research consortium (nesg) target er24

PDB Compounds: (A:) hypothetical shikimate 5-dehydrogenase-like protein ydib

SCOPe Domain Sequences for d1npda2:

Sequence; same for both SEQRES and ATOM records:

>d1npda2 c.58.1.5 (A:1-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}
mdvtakyeliglmaypirhslspemqnkalekaglpftymafevdndsfpgaieglkalk
mrgtgvsmpnkqlaceyvdeltpaaklvgaintivnddgylrgynt

Timeline for d1npda2:

• d1npda2 first appeared in SCOP 1.63
  
• d1npda2 appears in SCOPe 2.05
  
• d1npda2 appears in SCOPe 2.07
  
• d1npda2 appears in the current release, SCOPe 2.08