Lineage for d1npda1 (1npd A:107-287)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2449371Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2449372Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2453552Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 proteins)
    extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site
  6. 2453792Protein Putative shikimate dehydrogenase YdiB [82305] (1 species)
  7. 2453793Species Escherichia coli [TaxId:562] [82306] (3 PDB entries)
  8. 2453796Domain d1npda1: 1npd A:107-287 [80681]
    Other proteins in same PDB: d1npda2, d1npdb2
    structural genomics
    complexed with nad

Details for d1npda1

PDB Entry: 1npd (more details), 2.3 Å

PDB Description: x-ray structure of shikimate dehydrogenase complexed with nad+ from e.coli (ydib) northeast structural genomics research consortium (nesg) target er24
PDB Compounds: (A:) hypothetical shikimate 5-dehydrogenase-like protein ydib

SCOPe Domain Sequences for d1npda1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1npda1 c.2.1.7 (A:107-287) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

SCOPe Domain Coordinates for d1npda1:

Click to download the PDB-style file with coordinates for d1npda1.
(The format of our PDB-style files is described here.)

Timeline for d1npda1:

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