SCOP 1.63: Domain d1nexd2: 1nex D:370-744

Lineage for d1nexd2 (1nex D:370-744)

1. Root: SCOP 1.63

2. Class b: All beta proteins [48724] (119 folds)

3. Fold b.69: 7-bladed beta-propeller [50964] (10 superfamilies)
   consists of seven 4-stranded beta-sheet motifs; meander

4. Superfamily b.69.4: WD40-repeat [50978] (1 family)
   also contains 8-bladed propellers

5. Family b.69.4.1: WD40-repeat [50979] (5 proteins)
   this is a repeat family; one repeat unit is 1tyq C:201-243 found in domain

6. Protein Cdc4 propeller domain [82169] (1 species)
   8-bladed beta-propeller without perfect 8-fold symmetry

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [82170] (1 PDB entry)

8. Domain d1nexd2: 1nex D:370-744 [80448]
   Other proteins in same PDB: d1nexa1, d1nexa2, d1nexb1, d1nexc1, d1nexc2, d1nexd1
   complexed with mse, tpo; mutant

Details for d1nexd2

PDB Entry: 1nex, 2.7 Å

PDB Description: crystal structure of scskp1-sccdc4-cpd peptide complex

SCOP Domain Sequences for d1nexd2:

Sequence, based on SEQRES records:

>d1nexd2 b.69.4.1 (D:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae)}
fvpqrttlrghmtsvitclqfednyvitgaddkmirvydsinkkfllqlsghdggvwalk
yahggilvsgstdrtvrvwdikkgccthvfeghnstvrcldiveyknikyivtgsrdntl
hvwklpkessvpdhgeehdyplvfhtpeenpyfvgvlrghmasvrtvsghgnivvsgsyd
ntlivwdvaqmkclyilsghtdriystiydherkrcisasmdttiriwdlengelmytlq
ghtalvgllrlsdkflvsaaadgsirgwdandysrkfsyhhtnlsaittfyvsdnilvsg
senqfniynlrsgklvhanilkdadqiwsvnfkgktlvaavekdgqsfleildfs

Sequence, based on observed residues (ATOM records):

>d1nexd2 b.69.4.1 (D:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae)}
fvpqrttlrghmtsvitclqfednyvitgaddkmirvydsinkkfllqlsghdggvwalk
yahggilvsgstdrtvrvwdikkgccthvfeghnstvrcldiveyknikyivtgsrdntl
hvwklpkdyplvfhtpeenpyfvgvlrghmasvrtvsghgnivvsgsydntlivwdvaqm
kclyilsghtdriystiydherkrcisasmdttiriwdlengelmytlqghtalvgllrl
sdkflvsaaadgsirgwdandysrkfsyhhtnlsaittfyvsdnilvsgsenqfniynlr
sgklvhanilkdadqiwsvnfkgktlvaavekdgqsfleildfs

Timeline for d1nexd2:

• d1nexd2 is new in SCOP 1.63
  
• d1nexd2 appears in SCOP 1.65
  
• d1nexd2 appears in the current release, SCOPe 2.08