Lineage for d1n3la_ (1n3l A:)

  1. Root: SCOP 1.63
  2. 235644Class c: Alpha and beta proteins (a/b) [51349] (117 folds)
  3. 242042Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 242043Superfamily c.26.1: Nucleotidylyl transferase [52374] (5 families) (S)
  5. 242044Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (11 proteins)
    contains a conserved all-alpha subdomain at the C-terminal extension
  6. 242129Protein Tyrosyl-tRNA synthetase (TyrRS) [52376] (4 species)
  7. 242139Species Human (Homo sapiens) [TaxId:9606] [82355] (1 PDB entry)
  8. 242140Domain d1n3la_: 1n3l A: [79966]
    mini-TyrRS; anticodon recognition part is more divergent; secreted cytokine with IL-8-like activity
    complexed with gol, so4

Details for d1n3la_

PDB Entry: 1n3l (more details), 1.18 Å

PDB Description: Crystal structure of a human aminoacyl-tRNA synthetase cytokine

SCOP Domain Sequences for d1n3la_:

Sequence, based on SEQRES records: (download)

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens)}
apspeeklhlitrnlqevlgeeklkeilkerelkiywgtattgkphvayfvpmskiadfl
kagcevtilfadlhayldnmkapwellelrvsyyenvikamlesigvpleklkfikgtdy
qlskeytldvyrlssvvtqhdskkagaevvkqvehpllsgllypglqaldeeylkvdaqf
ggidqrkiftfaekylpalgyskrvhlmnpmvpgltgskmssseeeskidlldrkedvkk
klkkafcepgnvenngvlsfikhvlfplksefvilrdekwggnktytayvdlekdfaaev
vhpgdlknsvevalnklldpirekfntpalkklasaayp

Sequence, based on observed residues (ATOM records): (download)

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens)}
apspeeklhlitrnlqevlgeeklkeilkerelkiywgtattgkphvayfvpmskiadfl
kagcevtilfadlhayldnmkapwellelrvsyyenvikamlesigvpleklkfikgtdy
qlskeytldvyrlssvvtqhdskkagaevvkqvehpllsgllypglqaldeeylkvdaqf
ggidqrkiftfaekylpalgyskrvhlmnpmvpgltgseskidlldrkedvkkklkkafc
epgnvenngvlsfikhvlfplksefvilrdekwggnktytayvdlekdfaaevvhpgdlk
nsvevalnklldpirekfntpalkklasaayp

SCOP Domain Coordinates for d1n3la_:

Click to download the PDB-style file with coordinates for d1n3la_.
(The format of our PDB-style files is described here.)

Timeline for d1n3la_: