SCOP 1.73: Domain d1m6ub_: 1m6u B:

Lineage for d1m6ub_ (1m6u B:)

1. Root: SCOP 1.73

2. Class b: All beta proteins [48724] (165 folds)

3. Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (10 superfamilies)
   sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold

4. Superfamily b.2.5: p53-like transcription factors [49417] (7 families)

5. Family b.2.5.7: DNA-binding domain from NDT80 [81992] (1 protein)

6. Protein DNA-binding domain from NDT80 [81993] (1 species)
   common fold is decorated with many additional structures

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [81994] (14 PDB entries)

8. Domain d1m6ub_: 1m6u B: [78707]
   complexed with so4

Details for d1m6ub_

PDB Entry: 1m6u, 2.3 Å

PDB Description: Crystal Structure of a Novel DNA-binding domain from Ndt80, a Transcriptional Activator Required for Meiosis in Yeast

PDB Compounds: (B:) NDT80 protein

SCOP Domain Sequences for d1m6ub_:

Sequence, based on SEQRES records:

>d1m6ub_ b.2.5.7 (B:) DNA-binding domain from NDT80 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykrnyftlvstfetan
cdldtflkssfdllvedssvesrlrvqyfaikikaknddddteinlvqhtakrdkgpqfc
psvcplvpsplpkhqiireasnvrnitktkkydstfylhrnhvnyeeygvdsllfsyped
siqkvaryervqfassisvkkpfqqnkhfslhvilgavvdpdtfhgenpgipydelalkn
gskgmfvylqemktpplii

Sequence, based on observed residues (ATOM records):

>d1m6ub_ b.2.5.7 (B:) DNA-binding domain from NDT80 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykrnyftlvstfetan
cdldtflkssfdllvedssvesrlrvqyfaikikaknddddteinlvqhtakrdkgpqfc
psvcplvpsplpkhqiireasnvrnitktkkydstfylhrnhvnyeeygvdsllfsyped
siqkvaryervqfassikhfslhvilgavvdpdtfhgenpgipydelalkngskgmfvyl
qemktpplii

Timeline for d1m6ub_:

• d1m6ub_ first appeared in SCOP 1.63
  
• d1m6ub_ appears in SCOP 1.71
  
• d1m6ub_ appears in SCOP 1.75
  
• d1m6ub_ appears in the current release, SCOPe 2.08