Lineage for d1m6ub_ (1m6u B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2033752Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
    sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
  4. 2034243Superfamily b.2.5: p53-like transcription factors [49417] (8 families) (S)
  5. 2034640Family b.2.5.7: DNA-binding domain from NDT80 [81992] (1 protein)
  6. 2034641Protein DNA-binding domain from NDT80 [81993] (1 species)
    common fold is decorated with many additional structures
  7. 2034642Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [81994] (14 PDB entries)
  8. 2034656Domain d1m6ub_: 1m6u B: [78707]
    complexed with so4

Details for d1m6ub_

PDB Entry: 1m6u (more details), 2.3 Å

PDB Description: Crystal Structure of a Novel DNA-binding domain from Ndt80, a Transcriptional Activator Required for Meiosis in Yeast
PDB Compounds: (B:) NDT80 protein

SCOPe Domain Sequences for d1m6ub_:

Sequence, based on SEQRES records: (download)

>d1m6ub_ b.2.5.7 (B:) DNA-binding domain from NDT80 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykrnyftlvstfetan
cdldtflkssfdllvedssvesrlrvqyfaikikaknddddteinlvqhtakrdkgpqfc
psvcplvpsplpkhqiireasnvrnitktkkydstfylhrnhvnyeeygvdsllfsyped
siqkvaryervqfassisvkkpfqqnkhfslhvilgavvdpdtfhgenpgipydelalkn
gskgmfvylqemktpplii

Sequence, based on observed residues (ATOM records): (download)

>d1m6ub_ b.2.5.7 (B:) DNA-binding domain from NDT80 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykrnyftlvstfetan
cdldtflkssfdllvedssvesrlrvqyfaikikaknddddteinlvqhtakrdkgpqfc
psvcplvpsplpkhqiireasnvrnitktkkydstfylhrnhvnyeeygvdsllfsyped
siqkvaryervqfassikhfslhvilgavvdpdtfhgenpgipydelalkngskgmfvyl
qemktpplii

SCOPe Domain Coordinates for d1m6ub_:

Click to download the PDB-style file with coordinates for d1m6ub_.
(The format of our PDB-style files is described here.)

Timeline for d1m6ub_: