SCOPe 2.08: Domain d1m2oa3: 1m2o A:120-390

Lineage for d1m2oa3 (1m2o A:120-390)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.62: vWA-like [53299] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 321456; strand 3 is antiparallel to the rest

4. Superfamily c.62.1: vWA-like [53300] (6 families)

5. Family c.62.1.2: Trunk domain of Sec23/24 [82458] (2 proteins)
   automatically mapped to Pfam PF04811

6. Protein Sec23 [82459] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [82460] (3 PDB entries)

8. Domain d1m2oa3: 1m2o A:120-390 [78482]
   Other proteins in same PDB: d1m2oa1, d1m2oa2, d1m2oa4, d1m2oa5, d1m2ob_, d1m2oc1, d1m2oc2, d1m2oc4, d1m2oc5, d1m2od_
   complexed with gnp, mg, zn

Details for d1m2oa3

PDB Entry: 1m2o, 2.5 Å

PDB Description: Crystal Structure of the Sec23-Sar1 complex

PDB Compounds: (A:) protein transport protein SEC23

SCOPe Domain Sequences for d1m2oa3:

Sequence, based on SEQRES records:

>d1m2oa3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vppifffvvdltsetenldslkesiitslsllppnaliglitygnvvqlhdlssetidrc
nvfrgdreyqlealtemltgqkptgpggaashlpnamnkvtpfslnrfflpleqvefkln
qllenlspdqwsvpaghrplratgsalniaslllqgcyknipariilfasgpgtvapgli
vnselkdplrshhdidsdhaqhykkackfynqiaqrvaanghtvdifagcydqigmsemk
qltdstggvllltdafstaifkqsylrlfak

Sequence, based on observed residues (ATOM records):

>d1m2oa3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vppifffvvdltsetenldslkesiitslsllppnaliglitygnvvqlhdlssetidrc
nvfrgdreyqlealtemltgqkptvtpfslnrfflpleqvefklnqllenlspdqwsvpa
ghrplratgsalniaslllqgcyknipariilfasgpgtvapglivnselkdplrshhdi
dsdhaqhykkackfynqiaqrvaanghtvdifagcydqigmsemkqltdstggvllltda
fstaifkqsylrlfak

Timeline for d1m2oa3:

• d1m2oa3 first appeared in SCOP 1.63
  
• d1m2oa3 appears in SCOPe 2.07