Lineage for d1jvaa1 (1jva A:282-463,A:699-741)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 303882Fold b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily)
    complex fold made of five beta-hairpin units and a b-ribbon arc
  4. 303883Superfamily b.86.1: Hedgehog/intein (Hint) domain [51294] (2 families) (S)
    duplication: contains two intertwined structural repeats
  5. 303888Family b.86.1.2: Intein (protein splicing domain) [51298] (3 proteins)
  6. 303895Protein VMA1-derived endonuclease (VDE) PI-Scei intein [51299] (1 species)
    also contains a homing endonuclease and DNA-binding domains
  7. 303896Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51300] (7 PDB entries)
  8. 303898Domain d1jvaa1: 1jva A:282-463,A:699-741 [77175]
    Other proteins in same PDB: d1jvaa2, d1jvaa3, d1jvab2, d1jvab3

Details for d1jvaa1

PDB Entry: 1jva (more details), 2.1 Å

PDB Description: crystal structure of the vma1-derived endonuclease bearing the n and c extein propeptides

SCOP Domain Sequences for d1jvaa1:

Sequence, based on SEQRES records: (download)

>d1jvaa1 b.86.1.2 (A:282-463,A:699-741) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae)}
vgsfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhra
hksdssrevpellkftcnatnelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgr
ivelvkevsksypisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqt
yaXcrgfyfelqelkeddyygitlsddsdhqfllanqvvvhssger

Sequence, based on observed residues (ATOM records): (download)

>d1jvaa1 b.86.1.2 (A:282-463,A:699-741) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae)}
vgsfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksevpe
llkftcnatnelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgrivelvkevsks
ypisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtyaXcrgfyfel
qelkeddyygitlsddsdhqfllanqvvvhssger

SCOP Domain Coordinates for d1jvaa1:

Click to download the PDB-style file with coordinates for d1jvaa1.
(The format of our PDB-style files is described here.)

Timeline for d1jvaa1: