SCOP 1.63: Domain d1jd9a2: 1jd9 A:1-354

Lineage for d1jd9a2 (1jd9 A:1-354)

1. Root: SCOP 1.63

2. Class c: Alpha and beta proteins (a/b) [51349] (117 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (26 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (9 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (21 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein Bacterial alpha-amylase [51447] (5 species)

7. Species Pseudoalteromonas haloplanctis (Alteromonas haloplanctis) [51449] (9 PDB entries)

8. Domain d1jd9a2: 1jd9 A:1-354 [77107]
   Other proteins in same PDB: d1jd9a1
   complexed with ca; mutant

Details for d1jd9a2

PDB Entry: 1jd9, 2.5 Å

PDB Description: crystal structure analysis of the mutant k300q of pseudoalteromonas haloplanctis alpha-amylase

SCOP Domain Sequences for d1jd9a2:

Sequence; same for both SEQRES and ATOM records:

>d1jd9a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanctis (Alteromonas haloplanctis)}
tpttfvhlfewnwqdvaqeceqylgpkgyaavqvsppnehitgsqwwtryqpvsyelqsr
ggnraqfidmvnrcsaagvdiyvdtlinhmaagsgtgtagnsfgnksfpiyspqdfhesc
tinnsdygndryrvqncelvgladldtasnyvqntiaayindlqaigvkgfrfdaskhva
asdiqslmakvngspvvfqevidqggeavgaseylstglvtefkystelgntfrngslaw
lsnfgegwgfmpsssavvfvdnhdnqrghggagnvitfedgrlydlanvfmlaypygypq
vmssydfhgdtdaggpnvpvhnngnlecfasnwkcehrwsyiaggvdfrnntad

Timeline for d1jd9a2:

• d1jd9a2 is new in SCOP 1.63
  
• d1jd9a2 appears in SCOP 1.65
  
• d1jd9a2 appears in the current release, SCOPe 2.08