Lineage for d1j85a_ (1j85 A:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2921212Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2921213Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2921214Family c.116.1.1: SpoU-like RNA 2'-O ribose methyltransferase [75218] (5 proteins)
    contains extra strand (3) in the parallel beta-sheet, order 321546
  6. 2921215Protein Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) [82374] (1 species)
  7. 2921216Species Haemophilus influenzae [TaxId:727] [82375] (2 PDB entries)
  8. 2921218Domain d1j85a_: 1j85 A: [77100]

Details for d1j85a_

PDB Entry: 1j85 (more details), 2 Å

PDB Description: Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (SpoU)
PDB Compounds: (A:) YibK

SCOPe Domain Sequences for d1j85a_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1j85a_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}

SCOPe Domain Coordinates for d1j85a_:

Click to download the PDB-style file with coordinates for d1j85a_.
(The format of our PDB-style files is described here.)

Timeline for d1j85a_: