Lineage for d1ivsb4 (1ivs B:1-189,B:343-578)

  1. Root: SCOP 1.63
  2. 235644Class c: Alpha and beta proteins (a/b) [51349] (117 folds)
  3. 242042Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 242043Superfamily c.26.1: Nucleotidylyl transferase [52374] (5 families) (S)
  5. 242044Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (11 protein domains)
    contains a conserved all-alpha subdomain at the C-terminal extension
  6. 242150Protein Valyl-tRNA synthetase (ValRS) [52390] (1 species)
  7. 242151Species Thermus thermophilus [TaxId:274] [52391] (2 PDB entries)
  8. 242153Domain d1ivsb4: 1ivs B:1-189,B:343-578 [76862]
    Other proteins in same PDB: d1ivsa1, d1ivsa2, d1ivsa3, d1ivsb1, d1ivsb2, d1ivsb3
    complexed with vaa

Details for d1ivsb4

PDB Entry: 1ivs (more details), 2.9 Å

PDB Description: crystal structure of thermus thermophilus valyl-trna synthetase complexed with trna(val) and valyl-adenylate analogue

SCOP Domain Sequences for d1ivsb4:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ivsb4 c.26.1.1 (B:1-189,B:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus}
mdlpkaydpksvepkwaekwaknpfvanpksgkppfvifmpppnvtgslhmghaldnslq
dalirykrmrgfeavwlpgtdhagiatqvvverlllkegktrhdlgrekflervwqwkee
sggtilkqlkrlgasadwsreaftmdekrsravryafsryyheglayraprlvnwcprce
ttlsdleveXtcsrcgtpieyaifpqwwlrmrplaeevlkglrrgdiafvperwkkvnmd
wlenvkdwnisrqlwwghqipawycedcqavnvprperyledptsceacgsprlkrdedv
fdtwfssalwplstlgwpeetedlkafypgdvlvtgydilflwvsrmevsgyhfmgerpf
ktvllhglvldekgqkmskskgnvidplemverygadalrfaliylatggqdirldlrwl
emarnf

SCOP Domain Coordinates for d1ivsb4:

Click to download the PDB-style file with coordinates for d1ivsb4.
(The format of our PDB-style files is described here.)

Timeline for d1ivsb4: