SCOPe 2.04: Domain d1h0md2: 1h0m D:2-169

Lineage for d1h0md2 (1h0m D:2-169)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.5: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors [75516] (1 family)
   alpha(2)-beta(2)-alpha(2)-beta(3)-alpha; possibly related to the PAS domain
   automatically mapped to Pfam PF03472

5. Family d.110.5.1: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors [75517] (1 protein)

6. Protein Transcription factor TraR, N-terminal domain [75518] (1 species)

7. Species Agrobacterium tumefaciens [TaxId:358] [75519] (2 PDB entries)

8. Domain d1h0md2: 1h0m D:2-169 [76449]
   Other proteins in same PDB: d1h0ma1, d1h0mb1, d1h0mc1, d1h0md1
   complexed with hsl, ooa

Details for d1h0md2

PDB Entry: 1h0m, 3 Å

PDB Description: three-dimensional structure of the quorum sensing protein trar bound to its autoinducer and to its target dna

PDB Compounds: (D:) transcriptional activator protein trar

SCOPe Domain Sequences for d1h0md2:

Sequence, based on SEQRES records:

>d1h0md2 d.110.5.1 (D:2-169) Transcription factor TraR, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqsty
fdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikta
ngfmsmftmasdkpvidldreidavaaaatigqiharisflrttptae

Sequence, based on observed residues (ATOM records):

>d1h0md2 d.110.5.1 (D:2-169) Transcription factor TraR, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqsty
fdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikta
ngfmsmftmasdkpvididavaaaatigqiharisflrttptae

Timeline for d1h0md2:

• d1h0md2 first appeared in SCOP 1.63
  
• d1h0md2 appears in SCOPe 2.03
  
• d1h0md2 appears in SCOPe 2.05
  
• d1h0md2 appears in the current release, SCOPe 2.08