Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.116: alpha/beta knot [75216] (1 superfamily) core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot |
Superfamily c.116.1: alpha/beta knot [75217] (9 families) known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily all known members have dimeric structures |
Family c.116.1.1: SpoU-like RNA 2'-O ribose methyltransferase [75218] (5 proteins) contains extra strand (3) in the parallel beta-sheet, order 321546 |
Protein RlmB, C-terminal domain [82376] (1 species) 23S rRNA G2251 2'O-methytransferase |
Species Escherichia coli [TaxId:562] [82377] (1 PDB entry) |
Domain d1gz0f1: 1gz0 F:78-243 [76400] Other proteins in same PDB: d1gz0a2, d1gz0b2, d1gz0b3, d1gz0c2, d1gz0d2, d1gz0d3, d1gz0f2, d1gz0f3, d1gz0h2, d1gz0h3 |
PDB Entry: 1gz0 (more details), 2.5 Å
SCOPe Domain Sequences for d1gz0f1:
Sequence; same for both SEQRES and ATOM records: (download)
>d1gz0f1 c.116.1.1 (F:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} rqyqendlpdliasldqpfllildgvtdphnlgaclrsadaagvhavivpkdrsaqlnat akkvacgaaesvplirvtnlartmrmlqeeniwivgtageadhtlyqskmtgrlalvmga egegmrrltrehcdelisipmagsvsslnvsvatgiclfeavrqrs
Timeline for d1gz0f1: