SCOPe 2.08: Domain d1gppa1: 1gpp A:-1-453

Lineage for d1gppa1 (1gpp A:-1-453)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily)
   complex fold made of five beta-hairpin units and a b-ribbon arc

4. Superfamily b.86.1: Hedgehog/intein (Hint) domain [51294] (3 families)
   duplication: contains two intertwined structural repeats

5. Family b.86.1.2: Intein (protein splicing domain) [51298] (5 proteins)

6. Protein VMA1-derived endonuclease (VDE) PI-Scei intein [51299] (1 species)
   also contains a homing endonuclease and DNA-binding domains

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51300] (8 PDB entries)
   Uniprot P17255 284-737

8. Domain d1gppa1: 1gpp A:-1-453 [76262]
   Other proteins in same PDB: d1gppa2
   domain I only

Details for d1gppa1

PDB Entry: 1gpp, 1.35 Å

PDB Description: crystal structure of the s.cerevisiae homing endonuclease pi-scei domain i

PDB Compounds: (A:) endonuclease pi-scei

SCOPe Domain Sequences for d1gppa1:

Sequence, based on SEQRES records:

>d1gppa1 b.86.1.2 (A:-1-453) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
acfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgsetmysvvqksqhrah
ksdssrempellkftcnathelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgri
velvkevsksypvsegperanelvesyrkasnkayfewtieardlsllgshvrkatyqty
apigaafarecrgfyfelqelkeddyygitlsddsdhqfllanqvvvh

Sequence, based on observed residues (ATOM records):

>d1gppa1 b.86.1.2 (A:-1-453) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
acfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgsetmysvvqksmpell
kftcnathelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgrivelvkevsksyp
vsegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtyapigaafarecr
gfyfelqelkeddyygitlsddsdhqfllanqvvvh

Timeline for d1gppa1:

• d1gppa1 first appeared in SCOP 1.63, called d1gppa_
  
• d1gppa1 appears in SCOPe 2.07