Lineage for d1bpea3 (1bpe A:149-335)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2563564Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
    core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
  4. 2563565Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families) (S)
  5. 2563573Family d.218.1.2: DNA polymerase beta-like [81300] (5 proteins)
    insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain
  6. 2563574Protein DNA polymerase beta, catalytic (31 kD) fragment [81578] (2 species)
  7. 2563721Species Norway rat (Rattus norvegicus) [TaxId:10116] [81576] (23 PDB entries)
  8. 2563750Domain d1bpea3: 1bpe A:149-335 [75816]
    Other proteins in same PDB: d1bpea1, d1bpea2
    complexed with dtp

Details for d1bpea3

PDB Entry: 1bpe (more details), 2.9 Å

PDB Description: crystal structure of rat dna polymerase beta; evidence for a common polymerase mechanism
PDB Compounds: (A:) DNA polymerase beta

SCOPe Domain Sequences for d1bpea3:

Sequence, based on SEQRES records: (download)

>d1bpea3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Norway rat (Rattus norvegicus) [TaxId: 10116]}
ripreemlqmqdivlnevkkldpeyiatvcgsfrrgaessgdmdvllthpnftsesskqp
kllhrvveqlqkvrfitdtlskgetkfmgvcqlpsendeneyphrridirlipkdqyycg
vlyftgsdifnknmrahalekgftineytirplgvtgvageplpvdseqdifdyiqwryr
epkdrse

Sequence, based on observed residues (ATOM records): (download)

>d1bpea3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Norway rat (Rattus norvegicus) [TaxId: 10116]}
ripreemlqmqdivlnevkkldpeyiatvcgsfrrgaessgdmdvllthpnftsesskqp
kllhrvveqlqkvrfitdtlskgetkfmgvcqlpseneyphrridirlipkdqyycgvly
ftgsdifnknmrahalekgftineytirplgvtgvageplpvdseqdifdyiqwryrepk
drse

SCOPe Domain Coordinates for d1bpea3:

Click to download the PDB-style file with coordinates for d1bpea3.
(The format of our PDB-style files is described here.)

Timeline for d1bpea3: