SCOPe 2.08: Domain d1bpda3: 1bpd A:149-335

Lineage for d1bpda3 (1bpd A:149-335)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
   core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123

4. Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families)

5. Family d.218.1.2: DNA polymerase beta-like [81300] (5 proteins)
   insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain

6. Protein DNA polymerase beta, catalytic (31 kD) fragment [81578] (2 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [81576] (23 PDB entries)

8. Domain d1bpda3: 1bpd A:149-335 [75814]
   Other proteins in same PDB: d1bpda1, d1bpda2
   complexed with po4

Details for d1bpda3

PDB Entry: 1bpd, 3.6 Å

PDB Description: crystal structure of rat dna polymerase beta: evidence for a common polymerase mechanism

PDB Compounds: (A:) DNA polymerase beta

SCOPe Domain Sequences for d1bpda3:

Sequence, based on SEQRES records:

>d1bpda3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Norway rat (Rattus norvegicus) [TaxId: 10116]}
ripreemlqmqdivlnevkkldpeyiatvcgsfrrgaessgdmdvllthpnftsesskqp
kllhrvveqlqkvrfitdtlskgetkfmgvcqlpsendeneyphrridirlipkdqyycg
vlyftgsdifnknmrahalekgftineytirplgvtgvageplpvdseqdifdyiqwryr
epkdrse

Sequence, based on observed residues (ATOM records):

>d1bpda3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Norway rat (Rattus norvegicus) [TaxId: 10116]}
ripreemlqmqdivlnevkkldpeyiatvcgsfrrgaessgdmdvllthpnftsesskqp
kllhrvveqlqkvrfitdtlskgetkfmgvcqlpseneyphrridirlipkdqyycgvly
ftgsdifnknmrahalekgftineytirplgvtgvageplpvdseqdifdyiqwryrepk
drse

Timeline for d1bpda3:

• d1bpda3 first appeared in SCOP 1.63, called d1bpd_4
  
• d1bpda3 appears in SCOPe 2.07